miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24807 3' -56.6 NC_005284.1 + 915 0.66 0.698561
Target:  5'- gGGCGUugGCaUCGGCAUguucgugcuggacgaCGAGUUCGg -3'
miRNA:   3'- gCCGCAugUGgAGCCGUG---------------GCUUGAGC- -5'
24807 3' -56.6 NC_005284.1 + 4482 0.66 0.672961
Target:  5'- uGGCucGCGgCggCGGUagcGCCGAACUCGa -3'
miRNA:   3'- gCCGcaUGUgGa-GCCG---UGGCUUGAGC- -5'
24807 3' -56.6 NC_005284.1 + 5912 0.66 0.683662
Target:  5'- gGGCGUgu-CCaCGGCGCCGAcuuCUCc -3'
miRNA:   3'- gCCGCAuguGGaGCCGUGGCUu--GAGc -5'
24807 3' -56.6 NC_005284.1 + 6622 0.66 0.650381
Target:  5'- gGGCGU-CACUUCGccagcgcGCGCCGGaauggGCUCu -3'
miRNA:   3'- gCCGCAuGUGGAGC-------CGUGGCU-----UGAGc -5'
24807 3' -56.6 NC_005284.1 + 6941 0.7 0.443588
Target:  5'- uCGGCGUcGCACCggagaaggcgcCGGCGCCGuauUUCGu -3'
miRNA:   3'- -GCCGCA-UGUGGa----------GCCGUGGCuu-GAGC- -5'
24807 3' -56.6 NC_005284.1 + 7265 0.72 0.345957
Target:  5'- aCGGUcgGCACCUCGaCGCCGAACaCGa -3'
miRNA:   3'- -GCCGcaUGUGGAGCcGUGGCUUGaGC- -5'
24807 3' -56.6 NC_005284.1 + 7292 0.69 0.492797
Target:  5'- aCGGCGauaGCAuCCUCGGUgugGCCGAcgUCGa -3'
miRNA:   3'- -GCCGCa--UGU-GGAGCCG---UGGCUugAGC- -5'
24807 3' -56.6 NC_005284.1 + 9116 0.7 0.423757
Target:  5'- aGGCGUGuuccaauuuccacCGCCUCGcGCACCGAcgaGC-CGc -3'
miRNA:   3'- gCCGCAU-------------GUGGAGC-CGUGGCU---UGaGC- -5'
24807 3' -56.6 NC_005284.1 + 9635 0.7 0.443588
Target:  5'- gCGGCGgAgGCUUCaGCgcagGCCGAGCUCGc -3'
miRNA:   3'- -GCCGCaUgUGGAGcCG----UGGCUUGAGC- -5'
24807 3' -56.6 NC_005284.1 + 10491 0.71 0.40628
Target:  5'- uGGCGaUGCGCCgUCGGUggucucggauGCCGAucaggcagcGCUCGa -3'
miRNA:   3'- gCCGC-AUGUGG-AGCCG----------UGGCU---------UGAGC- -5'
24807 3' -56.6 NC_005284.1 + 10589 0.66 0.651459
Target:  5'- gCGcGCGUugACgCUCuggacGCACCGGACUUc -3'
miRNA:   3'- -GC-CGCAugUG-GAGc----CGUGGCUUGAGc -5'
24807 3' -56.6 NC_005284.1 + 11892 0.67 0.6191
Target:  5'- gGGUGcGCGCCucUCGGCAUCGuccaUCGa -3'
miRNA:   3'- gCCGCaUGUGG--AGCCGUGGCuug-AGC- -5'
24807 3' -56.6 NC_005284.1 + 15352 0.7 0.443588
Target:  5'- uCGGCGUGCagGCCgauggcucgaUCGGCAUCGAcgACUgGu -3'
miRNA:   3'- -GCCGCAUG--UGG----------AGCCGUGGCU--UGAgC- -5'
24807 3' -56.6 NC_005284.1 + 16081 0.68 0.533896
Target:  5'- gGGCucuucaACACgauuCUCGGCGCCGcACUCGu -3'
miRNA:   3'- gCCGca----UGUG----GAGCCGUGGCuUGAGC- -5'
24807 3' -56.6 NC_005284.1 + 16205 0.67 0.6191
Target:  5'- -cGCGUGCG-CUCGGCcgaacgGCCGucucGCUCGg -3'
miRNA:   3'- gcCGCAUGUgGAGCCG------UGGCu---UGAGC- -5'
24807 3' -56.6 NC_005284.1 + 16762 0.69 0.502942
Target:  5'- uGcGCGUGCGCUUCGGUguGCCGGcGCUa- -3'
miRNA:   3'- gC-CGCAUGUGGAGCCG--UGGCU-UGAgc -5'
24807 3' -56.6 NC_005284.1 + 17720 0.69 0.502942
Target:  5'- aCGGCGUucggcuGCACgUCGcaggcgcaggcGCACCG-GCUCGg -3'
miRNA:   3'- -GCCGCA------UGUGgAGC-----------CGUGGCuUGAGC- -5'
24807 3' -56.6 NC_005284.1 + 20683 0.72 0.322143
Target:  5'- uCGGCGUGCAgUuuuacggugUCGGCACgGAAC-CGg -3'
miRNA:   3'- -GCCGCAUGUgG---------AGCCGUGgCUUGaGC- -5'
24807 3' -56.6 NC_005284.1 + 21613 0.66 0.672961
Target:  5'- gGGCa-AgAUCUCGcGCGCCGcGCUCGa -3'
miRNA:   3'- gCCGcaUgUGGAGC-CGUGGCuUGAGC- -5'
24807 3' -56.6 NC_005284.1 + 22452 0.75 0.204401
Target:  5'- uCGGCGUggACGCUUCGGCcgacugccaaucgGCCGGAUUCu -3'
miRNA:   3'- -GCCGCA--UGUGGAGCCG-------------UGGCUUGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.