Results 21 - 39 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24807 | 3' | -56.6 | NC_005284.1 | + | 31432 | 0.66 | 0.651459 |
Target: 5'- gGGCGacgUGCGCCgcugCGGCgcGCCGGGCc-- -3' miRNA: 3'- gCCGC---AUGUGGa---GCCG--UGGCUUGagc -5' |
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24807 | 3' | -56.6 | NC_005284.1 | + | 33149 | 0.7 | 0.424689 |
Target: 5'- gCGGCGaucgcacGCugCUCGGCGUCGAGCgCGg -3' miRNA: 3'- -GCCGCa------UGugGAGCCGUGGCUUGaGC- -5' |
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24807 | 3' | -56.6 | NC_005284.1 | + | 33588 | 0.72 | 0.35417 |
Target: 5'- gGGCGUGCACgUCaGgACCGGcuccgcguGCUCGa -3' miRNA: 3'- gCCGCAUGUGgAGcCgUGGCU--------UGAGC- -5' |
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24807 | 3' | -56.6 | NC_005284.1 | + | 34845 | 0.66 | 0.683662 |
Target: 5'- uGGCGUcGCACa--GGCGCaCGAuugggaucgGCUCGa -3' miRNA: 3'- gCCGCA-UGUGgagCCGUG-GCU---------UGAGC- -5' |
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24807 | 3' | -56.6 | NC_005284.1 | + | 38720 | 0.66 | 0.651459 |
Target: 5'- cCGGCucaaUGCGCUgcaUGGCGCCGGacggcaugaGCUCGa -3' miRNA: 3'- -GCCGc---AUGUGGa--GCCGUGGCU---------UGAGC- -5' |
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24807 | 3' | -56.6 | NC_005284.1 | + | 40162 | 0.67 | 0.6191 |
Target: 5'- aCGGCGUcgagguagcGCGCgagcgUUCGGCGCCGGAacacuUUCGc -3' miRNA: 3'- -GCCGCA---------UGUG-----GAGCCGUGGCUU-----GAGC- -5' |
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24807 | 3' | -56.6 | NC_005284.1 | + | 42507 | 0.69 | 0.502942 |
Target: 5'- cCGGCugcgACACCacugCGGCGCggaccaCGAACUCGc -3' miRNA: 3'- -GCCGca--UGUGGa---GCCGUG------GCUUGAGC- -5' |
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24807 | 3' | -56.6 | NC_005284.1 | + | 42830 | 0.69 | 0.491787 |
Target: 5'- ---aGUGCAuCCUCGGCAUugcggaaCGAACUCGu -3' miRNA: 3'- gccgCAUGU-GGAGCCGUG-------GCUUGAGC- -5' |
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24807 | 3' | -56.6 | NC_005284.1 | + | 44889 | 0.72 | 0.329943 |
Target: 5'- gCGaGCG-ACGCUUCGGCgcGCUGAGCUCc -3' miRNA: 3'- -GC-CGCaUGUGGAGCCG--UGGCUUGAGc -5' |
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24807 | 3' | -56.6 | NC_005284.1 | + | 44959 | 0.66 | 0.683662 |
Target: 5'- gGGCGUGC-CCgugaugCGcGCGCCGAuUUCc -3' miRNA: 3'- gCCGCAUGuGGa-----GC-CGUGGCUuGAGc -5' |
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24807 | 3' | -56.6 | NC_005284.1 | + | 45797 | 0.69 | 0.46295 |
Target: 5'- aGGCGUcgGCAUgCUCGGCgaagguguccgcACCGcACUCGa -3' miRNA: 3'- gCCGCA--UGUG-GAGCCG------------UGGCuUGAGC- -5' |
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24807 | 3' | -56.6 | NC_005284.1 | + | 47074 | 0.66 | 0.640677 |
Target: 5'- gCGGCGgcacgaGCUUCGGCGCaccGCUCa -3' miRNA: 3'- -GCCGCaug---UGGAGCCGUGgcuUGAGc -5' |
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24807 | 3' | -56.6 | NC_005284.1 | + | 47172 | 0.73 | 0.299575 |
Target: 5'- gGcGCGUACAUCa-GGCGCCGAACcCGa -3' miRNA: 3'- gC-CGCAUGUGGagCCGUGGCUUGaGC- -5' |
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24807 | 3' | -56.6 | NC_005284.1 | + | 47806 | 0.68 | 0.523497 |
Target: 5'- gGGCGaGCGCUuggCGGCGCUGcgauggguGCUCGg -3' miRNA: 3'- gCCGCaUGUGGa--GCCGUGGCu-------UGAGC- -5' |
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24807 | 3' | -56.6 | NC_005284.1 | + | 48761 | 0.67 | 0.6191 |
Target: 5'- gCGGCGUGCGCCgcgaguugCGuuGCAUggCGAACUgCGa -3' miRNA: 3'- -GCCGCAUGUGGa-------GC--CGUG--GCUUGA-GC- -5' |
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24807 | 3' | -56.6 | NC_005284.1 | + | 49089 | 0.66 | 0.651459 |
Target: 5'- gCGGUaaGCAaCUCGGCAUCGAGCagcgCGa -3' miRNA: 3'- -GCCGcaUGUgGAGCCGUGGCUUGa---GC- -5' |
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24807 | 3' | -56.6 | NC_005284.1 | + | 50456 | 0.69 | 0.482746 |
Target: 5'- cCGGCGgauuuCACUUCGuCACCGAugcGCUUGa -3' miRNA: 3'- -GCCGCau---GUGGAGCcGUGGCU---UGAGC- -5' |
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24807 | 3' | -56.6 | NC_005284.1 | + | 53839 | 1.09 | 0.000951 |
Target: 5'- cCGGCGUACACCUCGGCACCGAACUCGu -3' miRNA: 3'- -GCCGCAUGUGGAGCCGUGGCUUGAGC- -5' |
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24807 | 3' | -56.6 | NC_005284.1 | + | 54322 | 0.66 | 0.672961 |
Target: 5'- uCGGCuuUGCGCCgaccaGGCGCUGccGGCUCGc -3' miRNA: 3'- -GCCGc-AUGUGGag---CCGUGGC--UUGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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