miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24807 3' -56.6 NC_005284.1 + 33149 0.7 0.424689
Target:  5'- gCGGCGaucgcacGCugCUCGGCGUCGAGCgCGg -3'
miRNA:   3'- -GCCGCa------UGugGAGCCGUGGCUUGaGC- -5'
24807 3' -56.6 NC_005284.1 + 9116 0.7 0.423757
Target:  5'- aGGCGUGuuccaauuuccacCGCCUCGcGCACCGAcgaGC-CGc -3'
miRNA:   3'- gCCGCAU-------------GUGGAGC-CGUGGCU---UGaGC- -5'
24807 3' -56.6 NC_005284.1 + 33588 0.72 0.35417
Target:  5'- gGGCGUGCACgUCaGgACCGGcuccgcguGCUCGa -3'
miRNA:   3'- gCCGCAUGUGgAGcCgUGGCU--------UGAGC- -5'
24807 3' -56.6 NC_005284.1 + 7265 0.72 0.345957
Target:  5'- aCGGUcgGCACCUCGaCGCCGAACaCGa -3'
miRNA:   3'- -GCCGcaUGUGGAGCcGUGGCUUGaGC- -5'
24807 3' -56.6 NC_005284.1 + 44889 0.72 0.329943
Target:  5'- gCGaGCG-ACGCUUCGGCgcGCUGAGCUCc -3'
miRNA:   3'- -GC-CGCaUGUGGAGCCG--UGGCUUGAGc -5'
24807 3' -56.6 NC_005284.1 + 20683 0.72 0.322143
Target:  5'- uCGGCGUGCAgUuuuacggugUCGGCACgGAAC-CGg -3'
miRNA:   3'- -GCCGCAUGUgG---------AGCCGUGgCUUGaGC- -5'
24807 3' -56.6 NC_005284.1 + 22452 0.75 0.204401
Target:  5'- uCGGCGUggACGCUUCGGCcgacugccaaucgGCCGGAUUCu -3'
miRNA:   3'- -GCCGCA--UGUGGAGCCG-------------UGGCUUGAGc -5'
24807 3' -56.6 NC_005284.1 + 7292 0.69 0.492797
Target:  5'- aCGGCGauaGCAuCCUCGGUgugGCCGAcgUCGa -3'
miRNA:   3'- -GCCGCa--UGU-GGAGCCG---UGGCUugAGC- -5'
24807 3' -56.6 NC_005284.1 + 42507 0.69 0.502942
Target:  5'- cCGGCugcgACACCacugCGGCGCggaccaCGAACUCGc -3'
miRNA:   3'- -GCCGca--UGUGGa---GCCGUG------GCUUGAGC- -5'
24807 3' -56.6 NC_005284.1 + 44959 0.66 0.683662
Target:  5'- gGGCGUGC-CCgugaugCGcGCGCCGAuUUCc -3'
miRNA:   3'- gCCGCAUGuGGa-----GC-CGUGGCUuGAGc -5'
24807 3' -56.6 NC_005284.1 + 5912 0.66 0.683662
Target:  5'- gGGCGUgu-CCaCGGCGCCGAcuuCUCc -3'
miRNA:   3'- gCCGCAuguGGaGCCGUGGCUu--GAGc -5'
24807 3' -56.6 NC_005284.1 + 54322 0.66 0.672961
Target:  5'- uCGGCuuUGCGCCgaccaGGCGCUGccGGCUCGc -3'
miRNA:   3'- -GCCGc-AUGUGGag---CCGUGGC--UUGAGC- -5'
24807 3' -56.6 NC_005284.1 + 10589 0.66 0.651459
Target:  5'- gCGcGCGUugACgCUCuggacGCACCGGACUUc -3'
miRNA:   3'- -GC-CGCAugUG-GAGc----CGUGGCUUGAGc -5'
24807 3' -56.6 NC_005284.1 + 6622 0.66 0.650381
Target:  5'- gGGCGU-CACUUCGccagcgcGCGCCGGaauggGCUCu -3'
miRNA:   3'- gCCGCAuGUGGAGC-------CGUGGCU-----UGAGc -5'
24807 3' -56.6 NC_005284.1 + 47074 0.66 0.640677
Target:  5'- gCGGCGgcacgaGCUUCGGCGCaccGCUCa -3'
miRNA:   3'- -GCCGCaug---UGGAGCCGUGgcuUGAGc -5'
24807 3' -56.6 NC_005284.1 + 40162 0.67 0.6191
Target:  5'- aCGGCGUcgagguagcGCGCgagcgUUCGGCGCCGGAacacuUUCGc -3'
miRNA:   3'- -GCCGCA---------UGUG-----GAGCCGUGGCUU-----GAGC- -5'
24807 3' -56.6 NC_005284.1 + 16205 0.67 0.6191
Target:  5'- -cGCGUGCG-CUCGGCcgaacgGCCGucucGCUCGg -3'
miRNA:   3'- gcCGCAUGUgGAGCCG------UGGCu---UGAGC- -5'
24807 3' -56.6 NC_005284.1 + 11892 0.67 0.6191
Target:  5'- gGGUGcGCGCCucUCGGCAUCGuccaUCGa -3'
miRNA:   3'- gCCGCaUGUGG--AGCCGUGGCuug-AGC- -5'
24807 3' -56.6 NC_005284.1 + 53839 1.09 0.000951
Target:  5'- cCGGCGUACACCUCGGCACCGAACUCGu -3'
miRNA:   3'- -GCCGCAUGUGGAGCCGUGGCUUGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.