Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24807 | 3' | -56.6 | NC_005284.1 | + | 10589 | 0.66 | 0.651459 |
Target: 5'- gCGcGCGUugACgCUCuggacGCACCGGACUUc -3' miRNA: 3'- -GC-CGCAugUG-GAGc----CGUGGCUUGAGc -5' |
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24807 | 3' | -56.6 | NC_005284.1 | + | 44889 | 0.72 | 0.329943 |
Target: 5'- gCGaGCG-ACGCUUCGGCgcGCUGAGCUCc -3' miRNA: 3'- -GC-CGCaUGUGGAGCCG--UGGCUUGAGc -5' |
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24807 | 3' | -56.6 | NC_005284.1 | + | 22452 | 0.75 | 0.204401 |
Target: 5'- uCGGCGUggACGCUUCGGCcgacugccaaucgGCCGGAUUCu -3' miRNA: 3'- -GCCGCA--UGUGGAGCCG-------------UGGCUUGAGc -5' |
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24807 | 3' | -56.6 | NC_005284.1 | + | 53839 | 1.09 | 0.000951 |
Target: 5'- cCGGCGUACACCUCGGCACCGAACUCGu -3' miRNA: 3'- -GCCGCAUGUGGAGCCGUGGCUUGAGC- -5' |
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24807 | 3' | -56.6 | NC_005284.1 | + | 16205 | 0.67 | 0.6191 |
Target: 5'- -cGCGUGCG-CUCGGCcgaacgGCCGucucGCUCGg -3' miRNA: 3'- gcCGCAUGUgGAGCCG------UGGCu---UGAGC- -5' |
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24807 | 3' | -56.6 | NC_005284.1 | + | 11892 | 0.67 | 0.6191 |
Target: 5'- gGGUGcGCGCCucUCGGCAUCGuccaUCGa -3' miRNA: 3'- gCCGCaUGUGG--AGCCGUGGCuug-AGC- -5' |
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24807 | 3' | -56.6 | NC_005284.1 | + | 7292 | 0.69 | 0.492797 |
Target: 5'- aCGGCGauaGCAuCCUCGGUgugGCCGAcgUCGa -3' miRNA: 3'- -GCCGCa--UGU-GGAGCCG---UGGCUugAGC- -5' |
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24807 | 3' | -56.6 | NC_005284.1 | + | 44959 | 0.66 | 0.683662 |
Target: 5'- gGGCGUGC-CCgugaugCGcGCGCCGAuUUCc -3' miRNA: 3'- gCCGCAUGuGGa-----GC-CGUGGCUuGAGc -5' |
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24807 | 3' | -56.6 | NC_005284.1 | + | 5912 | 0.66 | 0.683662 |
Target: 5'- gGGCGUgu-CCaCGGCGCCGAcuuCUCc -3' miRNA: 3'- gCCGCAuguGGaGCCGUGGCUu--GAGc -5' |
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24807 | 3' | -56.6 | NC_005284.1 | + | 7265 | 0.72 | 0.345957 |
Target: 5'- aCGGUcgGCACCUCGaCGCCGAACaCGa -3' miRNA: 3'- -GCCGcaUGUGGAGCcGUGGCUUGaGC- -5' |
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24807 | 3' | -56.6 | NC_005284.1 | + | 33149 | 0.7 | 0.424689 |
Target: 5'- gCGGCGaucgcacGCugCUCGGCGUCGAGCgCGg -3' miRNA: 3'- -GCCGCa------UGugGAGCCGUGGCUUGaGC- -5' |
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24807 | 3' | -56.6 | NC_005284.1 | + | 50456 | 0.69 | 0.482746 |
Target: 5'- cCGGCGgauuuCACUUCGuCACCGAugcGCUUGa -3' miRNA: 3'- -GCCGCau---GUGGAGCcGUGGCU---UGAGC- -5' |
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24807 | 3' | -56.6 | NC_005284.1 | + | 6622 | 0.66 | 0.650381 |
Target: 5'- gGGCGU-CACUUCGccagcgcGCGCCGGaauggGCUCu -3' miRNA: 3'- gCCGCAuGUGGAGC-------CGUGGCU-----UGAGc -5' |
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24807 | 3' | -56.6 | NC_005284.1 | + | 9116 | 0.7 | 0.423757 |
Target: 5'- aGGCGUGuuccaauuuccacCGCCUCGcGCACCGAcgaGC-CGc -3' miRNA: 3'- gCCGCAU-------------GUGGAGC-CGUGGCU---UGaGC- -5' |
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24807 | 3' | -56.6 | NC_005284.1 | + | 47074 | 0.66 | 0.640677 |
Target: 5'- gCGGCGgcacgaGCUUCGGCGCaccGCUCa -3' miRNA: 3'- -GCCGCaug---UGGAGCCGUGgcuUGAGc -5' |
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24807 | 3' | -56.6 | NC_005284.1 | + | 42830 | 0.69 | 0.491787 |
Target: 5'- ---aGUGCAuCCUCGGCAUugcggaaCGAACUCGu -3' miRNA: 3'- gccgCAUGU-GGAGCCGUG-------GCUUGAGC- -5' |
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24807 | 3' | -56.6 | NC_005284.1 | + | 33588 | 0.72 | 0.35417 |
Target: 5'- gGGCGUGCACgUCaGgACCGGcuccgcguGCUCGa -3' miRNA: 3'- gCCGCAUGUGgAGcCgUGGCU--------UGAGC- -5' |
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24807 | 3' | -56.6 | NC_005284.1 | + | 20683 | 0.72 | 0.322143 |
Target: 5'- uCGGCGUGCAgUuuuacggugUCGGCACgGAAC-CGg -3' miRNA: 3'- -GCCGCAUGUgG---------AGCCGUGgCUUGaGC- -5' |
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24807 | 3' | -56.6 | NC_005284.1 | + | 40162 | 0.67 | 0.6191 |
Target: 5'- aCGGCGUcgagguagcGCGCgagcgUUCGGCGCCGGAacacuUUCGc -3' miRNA: 3'- -GCCGCA---------UGUG-----GAGCCGUGGCUU-----GAGC- -5' |
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24807 | 3' | -56.6 | NC_005284.1 | + | 42507 | 0.69 | 0.502942 |
Target: 5'- cCGGCugcgACACCacugCGGCGCggaccaCGAACUCGc -3' miRNA: 3'- -GCCGca--UGUGGa---GCCGUG------GCUUGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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