miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24809 5' -55.1 NC_005284.1 + 52143 1.13 0.000477
Target:  5'- aUCAGCUCAAGGCCGAUGAGCACACCCg -3'
miRNA:   3'- -AGUCGAGUUCCGGCUACUCGUGUGGG- -5'
24809 5' -55.1 NC_005284.1 + 21244 0.78 0.160468
Target:  5'- aUCAGCUCGcGGCggCGGUGAGCuuCGCCUa -3'
miRNA:   3'- -AGUCGAGUuCCG--GCUACUCGu-GUGGG- -5'
24809 5' -55.1 NC_005284.1 + 1937 0.76 0.204984
Target:  5'- cCAGCUCGAGGaCGAaGGGCugACgCCg -3'
miRNA:   3'- aGUCGAGUUCCgGCUaCUCGugUG-GG- -5'
24809 5' -55.1 NC_005284.1 + 24191 0.75 0.24031
Target:  5'- cUAGUUCAGcGGcCCGAUgGAGCGCGCCa -3'
miRNA:   3'- aGUCGAGUU-CC-GGCUA-CUCGUGUGGg -5'
24809 5' -55.1 NC_005284.1 + 21182 0.73 0.326019
Target:  5'- aCGGCUCAucgagcacgcGGaGCCGGuccUGAcguGCACGCCCg -3'
miRNA:   3'- aGUCGAGU----------UC-CGGCU---ACU---CGUGUGGG- -5'
24809 5' -55.1 NC_005284.1 + 4458 0.72 0.359231
Target:  5'- gUCuGCUgGAGGCCGAgcaaaAGCugGCUCg -3'
miRNA:   3'- -AGuCGAgUUCCGGCUac---UCGugUGGG- -5'
24809 5' -55.1 NC_005284.1 + 39395 0.71 0.422813
Target:  5'- -aAGCUgAAGGCCGAUGuGGCG-ACCg -3'
miRNA:   3'- agUCGAgUUCCGGCUAC-UCGUgUGGg -5'
24809 5' -55.1 NC_005284.1 + 46305 0.7 0.472149
Target:  5'- gUUGGUUCuguaucgcauGGCgGAUGGGCgACGCCCg -3'
miRNA:   3'- -AGUCGAGuu--------CCGgCUACUCG-UGUGGG- -5'
24809 5' -55.1 NC_005284.1 + 6812 0.7 0.492687
Target:  5'- aUCGGC--GAGGCCGAggGGGCgauucGCACCg -3'
miRNA:   3'- -AGUCGagUUCCGGCUa-CUCG-----UGUGGg -5'
24809 5' -55.1 NC_005284.1 + 42479 0.7 0.492687
Target:  5'- uUCAaucGCUCAAGGU--GUGcgcGCACGCCCg -3'
miRNA:   3'- -AGU---CGAGUUCCGgcUACu--CGUGUGGG- -5'
24809 5' -55.1 NC_005284.1 + 5804 0.69 0.545683
Target:  5'- --cGCUCGAGGuuGcgcuuGCACACCUg -3'
miRNA:   3'- aguCGAGUUCCggCuacu-CGUGUGGG- -5'
24809 5' -55.1 NC_005284.1 + 21552 0.69 0.545683
Target:  5'- aUCGGCUU---GCCGAcGAGCAgGCCg -3'
miRNA:   3'- -AGUCGAGuucCGGCUaCUCGUgUGGg -5'
24809 5' -55.1 NC_005284.1 + 38832 0.68 0.556515
Target:  5'- aCGGCgaacgUGAGGCCGgcGucGCGCGCCg -3'
miRNA:   3'- aGUCGa----GUUCCGGCuaCu-CGUGUGGg -5'
24809 5' -55.1 NC_005284.1 + 2788 0.68 0.567409
Target:  5'- uUCAGuCUCGAuGGCuUGAUGGGUcuuACGCCg -3'
miRNA:   3'- -AGUC-GAGUU-CCG-GCUACUCG---UGUGGg -5'
24809 5' -55.1 NC_005284.1 + 41350 0.68 0.589347
Target:  5'- aUCAGgUCAucuGGCCugcgGAUcgccGAGaCACGCCCg -3'
miRNA:   3'- -AGUCgAGUu--CCGG----CUA----CUC-GUGUGGG- -5'
24809 5' -55.1 NC_005284.1 + 24408 0.68 0.600376
Target:  5'- cCAGCaCAcgcGGGCCGAgc-GCAuCGCCCu -3'
miRNA:   3'- aGUCGaGU---UCCGGCUacuCGU-GUGGG- -5'
24809 5' -55.1 NC_005284.1 + 54321 0.68 0.611432
Target:  5'- uUCGGCUUugcGCCGAccaGGCGCugCCg -3'
miRNA:   3'- -AGUCGAGuucCGGCUac-UCGUGugGG- -5'
24809 5' -55.1 NC_005284.1 + 9184 0.67 0.622505
Target:  5'- gCAGCUCAAaucgauGGCCGAaGAgggaaaGCugACCg -3'
miRNA:   3'- aGUCGAGUU------CCGGCUaCU------CGugUGGg -5'
24809 5' -55.1 NC_005284.1 + 47785 0.67 0.622505
Target:  5'- gUCAGCccggCGAGcGCCaugucGAGCGCGCCa -3'
miRNA:   3'- -AGUCGa---GUUC-CGGcua--CUCGUGUGGg -5'
24809 5' -55.1 NC_005284.1 + 11849 0.67 0.633588
Target:  5'- gCGGCUCGcguugcAGGCCGAcuGGCGCGUCg -3'
miRNA:   3'- aGUCGAGU------UCCGGCUacUCGUGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.