Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24809 | 5' | -55.1 | NC_005284.1 | + | 1672 | 0.67 | 0.666787 |
Target: 5'- --cGCcgugCGAGGCgUGAUGuAGCGCGCCg -3' miRNA: 3'- aguCGa---GUUCCG-GCUAC-UCGUGUGGg -5' |
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24809 | 5' | -55.1 | NC_005284.1 | + | 1937 | 0.76 | 0.204984 |
Target: 5'- cCAGCUCGAGGaCGAaGGGCugACgCCg -3' miRNA: 3'- aGUCGAGUUCCgGCUaCUCGugUG-GG- -5' |
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24809 | 5' | -55.1 | NC_005284.1 | + | 2788 | 0.68 | 0.567409 |
Target: 5'- uUCAGuCUCGAuGGCuUGAUGGGUcuuACGCCg -3' miRNA: 3'- -AGUC-GAGUU-CCG-GCUACUCG---UGUGGg -5' |
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24809 | 5' | -55.1 | NC_005284.1 | + | 4255 | 0.66 | 0.688772 |
Target: 5'- aCAGUUC--GGCCGcaaGAGCggcggcgacucGCACCCg -3' miRNA: 3'- aGUCGAGuuCCGGCua-CUCG-----------UGUGGG- -5' |
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24809 | 5' | -55.1 | NC_005284.1 | + | 4458 | 0.72 | 0.359231 |
Target: 5'- gUCuGCUgGAGGCCGAgcaaaAGCugGCUCg -3' miRNA: 3'- -AGuCGAgUUCCGGCUac---UCGugUGGG- -5' |
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24809 | 5' | -55.1 | NC_005284.1 | + | 5804 | 0.69 | 0.545683 |
Target: 5'- --cGCUCGAGGuuGcgcuuGCACACCUg -3' miRNA: 3'- aguCGAGUUCCggCuacu-CGUGUGGG- -5' |
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24809 | 5' | -55.1 | NC_005284.1 | + | 6812 | 0.7 | 0.492687 |
Target: 5'- aUCGGC--GAGGCCGAggGGGCgauucGCACCg -3' miRNA: 3'- -AGUCGagUUCCGGCUa-CUCG-----UGUGGg -5' |
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24809 | 5' | -55.1 | NC_005284.1 | + | 9184 | 0.67 | 0.622505 |
Target: 5'- gCAGCUCAAaucgauGGCCGAaGAgggaaaGCugACCg -3' miRNA: 3'- aGUCGAGUU------CCGGCUaCU------CGugUGGg -5' |
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24809 | 5' | -55.1 | NC_005284.1 | + | 9646 | 0.66 | 0.721308 |
Target: 5'- uUCAGCgc-AGGCCGAgcucgcGGGCAUGCg- -3' miRNA: 3'- -AGUCGaguUCCGGCUa-----CUCGUGUGgg -5' |
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24809 | 5' | -55.1 | NC_005284.1 | + | 10406 | 0.66 | 0.688772 |
Target: 5'- -aGGCgucgCGGgcGGCCGAUGAcGCGCAgUCg -3' miRNA: 3'- agUCGa---GUU--CCGGCUACU-CGUGUgGG- -5' |
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24809 | 5' | -55.1 | NC_005284.1 | + | 11849 | 0.67 | 0.633588 |
Target: 5'- gCGGCUCGcguugcAGGCCGAcuGGCGCGUCg -3' miRNA: 3'- aGUCGAGU------UCCGGCUacUCGUGUGGg -5' |
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24809 | 5' | -55.1 | NC_005284.1 | + | 14490 | 0.67 | 0.64467 |
Target: 5'- gUCGGCUCuacgguguaGCCGAgaaacgGGGUAgCGCCCg -3' miRNA: 3'- -AGUCGAGuuc------CGGCUa-----CUCGU-GUGGG- -5' |
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24809 | 5' | -55.1 | NC_005284.1 | + | 18754 | 0.66 | 0.725591 |
Target: 5'- -gGGCUCGcGGUCgGGcagguguuuuauuucUGGGCGCGCCUg -3' miRNA: 3'- agUCGAGUuCCGG-CU---------------ACUCGUGUGGG- -5' |
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24809 | 5' | -55.1 | NC_005284.1 | + | 21182 | 0.73 | 0.326019 |
Target: 5'- aCGGCUCAucgagcacgcGGaGCCGGuccUGAcguGCACGCCCg -3' miRNA: 3'- aGUCGAGU----------UC-CGGCU---ACU---CGUGUGGG- -5' |
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24809 | 5' | -55.1 | NC_005284.1 | + | 21244 | 0.78 | 0.160468 |
Target: 5'- aUCAGCUCGcGGCggCGGUGAGCuuCGCCUa -3' miRNA: 3'- -AGUCGAGUuCCG--GCUACUCGu-GUGGG- -5' |
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24809 | 5' | -55.1 | NC_005284.1 | + | 21552 | 0.69 | 0.545683 |
Target: 5'- aUCGGCUU---GCCGAcGAGCAgGCCg -3' miRNA: 3'- -AGUCGAGuucCGGCUaCUCGUgUGGg -5' |
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24809 | 5' | -55.1 | NC_005284.1 | + | 24191 | 0.75 | 0.24031 |
Target: 5'- cUAGUUCAGcGGcCCGAUgGAGCGCGCCa -3' miRNA: 3'- aGUCGAGUU-CC-GGCUA-CUCGUGUGGg -5' |
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24809 | 5' | -55.1 | NC_005284.1 | + | 24408 | 0.68 | 0.600376 |
Target: 5'- cCAGCaCAcgcGGGCCGAgc-GCAuCGCCCu -3' miRNA: 3'- aGUCGaGU---UCCGGCUacuCGU-GUGGG- -5' |
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24809 | 5' | -55.1 | NC_005284.1 | + | 29826 | 0.66 | 0.721308 |
Target: 5'- gCGGCUCcaAGGGagaCGcgGAGCGCAUg- -3' miRNA: 3'- aGUCGAG--UUCCg--GCuaCUCGUGUGgg -5' |
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24809 | 5' | -55.1 | NC_005284.1 | + | 32012 | 0.66 | 0.688772 |
Target: 5'- -uGGUcgUUGAGGCUGAcGAucGCGCGCCCc -3' miRNA: 3'- agUCG--AGUUCCGGCUaCU--CGUGUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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