miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24809 5' -55.1 NC_005284.1 + 38832 0.68 0.556515
Target:  5'- aCGGCgaacgUGAGGCCGgcGucGCGCGCCg -3'
miRNA:   3'- aGUCGa----GUUCCGGCuaCu-CGUGUGGg -5'
24809 5' -55.1 NC_005284.1 + 39056 0.66 0.688772
Target:  5'- gUCGGCUUAcGGCCGAaaucgGAaaGCgGCCCa -3'
miRNA:   3'- -AGUCGAGUuCCGGCUa----CUcgUG-UGGG- -5'
24809 5' -55.1 NC_005284.1 + 39395 0.71 0.422813
Target:  5'- -aAGCUgAAGGCCGAUGuGGCG-ACCg -3'
miRNA:   3'- agUCGAgUUCCGGCUAC-UCGUgUGGg -5'
24809 5' -55.1 NC_005284.1 + 39628 0.66 0.699688
Target:  5'- aCGGCcgCAAGGuuGcgGcAGCGCACg- -3'
miRNA:   3'- aGUCGa-GUUCCggCuaC-UCGUGUGgg -5'
24809 5' -55.1 NC_005284.1 + 39809 0.67 0.665683
Target:  5'- -gAGCuUCAaccGGGCCGcgugccgcauugcAUGGGCGCGgCCg -3'
miRNA:   3'- agUCG-AGU---UCCGGC-------------UACUCGUGUgGG- -5'
24809 5' -55.1 NC_005284.1 + 41350 0.68 0.589347
Target:  5'- aUCAGgUCAucuGGCCugcgGAUcgccGAGaCACGCCCg -3'
miRNA:   3'- -AGUCgAGUu--CCGG----CUA----CUC-GUGUGGG- -5'
24809 5' -55.1 NC_005284.1 + 42479 0.7 0.492687
Target:  5'- uUCAaucGCUCAAGGU--GUGcgcGCACGCCCg -3'
miRNA:   3'- -AGU---CGAGUUCCGgcUACu--CGUGUGGG- -5'
24809 5' -55.1 NC_005284.1 + 43849 0.67 0.665683
Target:  5'- cCGGCgaCGAGGCCGGccaugcGGGCcugcgcaucauucGCGCCCu -3'
miRNA:   3'- aGUCGa-GUUCCGGCUa-----CUCG-------------UGUGGG- -5'
24809 5' -55.1 NC_005284.1 + 44256 0.66 0.677801
Target:  5'- -aGGCcggCGAGGaauCGAUcGAGCGCugCCu -3'
miRNA:   3'- agUCGa--GUUCCg--GCUA-CUCGUGugGG- -5'
24809 5' -55.1 NC_005284.1 + 44774 0.67 0.655739
Target:  5'- cUCGGCUugcgCAAGGCCGcgGuccgucucggccAGCgACGCCg -3'
miRNA:   3'- -AGUCGA----GUUCCGGCuaC------------UCG-UGUGGg -5'
24809 5' -55.1 NC_005284.1 + 46305 0.7 0.472149
Target:  5'- gUUGGUUCuguaucgcauGGCgGAUGGGCgACGCCCg -3'
miRNA:   3'- -AGUCGAGuu--------CCGgCUACUCG-UGUGGG- -5'
24809 5' -55.1 NC_005284.1 + 46902 0.66 0.731989
Target:  5'- cCGGCUUcgcaugcuGGCUaAUGGGCugGCCUa -3'
miRNA:   3'- aGUCGAGuu------CCGGcUACUCGugUGGG- -5'
24809 5' -55.1 NC_005284.1 + 47785 0.67 0.622505
Target:  5'- gUCAGCccggCGAGcGCCaugucGAGCGCGCCa -3'
miRNA:   3'- -AGUCGa---GUUC-CGGcua--CUCGUGUGGg -5'
24809 5' -55.1 NC_005284.1 + 52143 1.13 0.000477
Target:  5'- aUCAGCUCAAGGCCGAUGAGCACACCCg -3'
miRNA:   3'- -AGUCGAGUUCCGGCUACUCGUGUGGG- -5'
24809 5' -55.1 NC_005284.1 + 53870 0.66 0.721308
Target:  5'- cCAGCaCGAacauGCCGAUGc-CACGCCCg -3'
miRNA:   3'- aGUCGaGUUc---CGGCUACucGUGUGGG- -5'
24809 5' -55.1 NC_005284.1 + 54125 0.67 0.666787
Target:  5'- cCAaCUCGGaGCCGGUagccGGGCugGCCCg -3'
miRNA:   3'- aGUcGAGUUcCGGCUA----CUCGugUGGG- -5'
24809 5' -55.1 NC_005284.1 + 54321 0.68 0.611432
Target:  5'- uUCGGCUUugcGCCGAccaGGCGCugCCg -3'
miRNA:   3'- -AGUCGAGuucCGGCUac-UCGUGugGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.