Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24809 | 5' | -55.1 | NC_005284.1 | + | 41350 | 0.68 | 0.589347 |
Target: 5'- aUCAGgUCAucuGGCCugcgGAUcgccGAGaCACGCCCg -3' miRNA: 3'- -AGUCgAGUu--CCGG----CUA----CUC-GUGUGGG- -5' |
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24809 | 5' | -55.1 | NC_005284.1 | + | 38832 | 0.68 | 0.556515 |
Target: 5'- aCGGCgaacgUGAGGCCGgcGucGCGCGCCg -3' miRNA: 3'- aGUCGa----GUUCCGGCuaCu-CGUGUGGg -5' |
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24809 | 5' | -55.1 | NC_005284.1 | + | 2788 | 0.68 | 0.567409 |
Target: 5'- uUCAGuCUCGAuGGCuUGAUGGGUcuuACGCCg -3' miRNA: 3'- -AGUC-GAGUU-CCG-GCUACUCG---UGUGGg -5' |
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24809 | 5' | -55.1 | NC_005284.1 | + | 24408 | 0.68 | 0.600376 |
Target: 5'- cCAGCaCAcgcGGGCCGAgc-GCAuCGCCCu -3' miRNA: 3'- aGUCGaGU---UCCGGCUacuCGU-GUGGG- -5' |
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24809 | 5' | -55.1 | NC_005284.1 | + | 54321 | 0.68 | 0.611432 |
Target: 5'- uUCGGCUUugcGCCGAccaGGCGCugCCg -3' miRNA: 3'- -AGUCGAGuucCGGCUac-UCGUGugGG- -5' |
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24809 | 5' | -55.1 | NC_005284.1 | + | 21552 | 0.69 | 0.545683 |
Target: 5'- aUCGGCUU---GCCGAcGAGCAgGCCg -3' miRNA: 3'- -AGUCGAGuucCGGCUaCUCGUgUGGg -5' |
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24809 | 5' | -55.1 | NC_005284.1 | + | 5804 | 0.69 | 0.545683 |
Target: 5'- --cGCUCGAGGuuGcgcuuGCACACCUg -3' miRNA: 3'- aguCGAGUUCCggCuacu-CGUGUGGG- -5' |
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24809 | 5' | -55.1 | NC_005284.1 | + | 42479 | 0.7 | 0.492687 |
Target: 5'- uUCAaucGCUCAAGGU--GUGcgcGCACGCCCg -3' miRNA: 3'- -AGU---CGAGUUCCGgcUACu--CGUGUGGG- -5' |
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24809 | 5' | -55.1 | NC_005284.1 | + | 46305 | 0.7 | 0.472149 |
Target: 5'- gUUGGUUCuguaucgcauGGCgGAUGGGCgACGCCCg -3' miRNA: 3'- -AGUCGAGuu--------CCGgCUACUCG-UGUGGG- -5' |
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24809 | 5' | -55.1 | NC_005284.1 | + | 6812 | 0.7 | 0.492687 |
Target: 5'- aUCGGC--GAGGCCGAggGGGCgauucGCACCg -3' miRNA: 3'- -AGUCGagUUCCGGCUa-CUCG-----UGUGGg -5' |
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24809 | 5' | -55.1 | NC_005284.1 | + | 39395 | 0.71 | 0.422813 |
Target: 5'- -aAGCUgAAGGCCGAUGuGGCG-ACCg -3' miRNA: 3'- agUCGAgUUCCGGCUAC-UCGUgUGGg -5' |
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24809 | 5' | -55.1 | NC_005284.1 | + | 4458 | 0.72 | 0.359231 |
Target: 5'- gUCuGCUgGAGGCCGAgcaaaAGCugGCUCg -3' miRNA: 3'- -AGuCGAgUUCCGGCUac---UCGugUGGG- -5' |
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24809 | 5' | -55.1 | NC_005284.1 | + | 21182 | 0.73 | 0.326019 |
Target: 5'- aCGGCUCAucgagcacgcGGaGCCGGuccUGAcguGCACGCCCg -3' miRNA: 3'- aGUCGAGU----------UC-CGGCU---ACU---CGUGUGGG- -5' |
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24809 | 5' | -55.1 | NC_005284.1 | + | 24191 | 0.75 | 0.24031 |
Target: 5'- cUAGUUCAGcGGcCCGAUgGAGCGCGCCa -3' miRNA: 3'- aGUCGAGUU-CC-GGCUA-CUCGUGUGGg -5' |
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24809 | 5' | -55.1 | NC_005284.1 | + | 1937 | 0.76 | 0.204984 |
Target: 5'- cCAGCUCGAGGaCGAaGGGCugACgCCg -3' miRNA: 3'- aGUCGAGUUCCgGCUaCUCGugUG-GG- -5' |
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24809 | 5' | -55.1 | NC_005284.1 | + | 21244 | 0.78 | 0.160468 |
Target: 5'- aUCAGCUCGcGGCggCGGUGAGCuuCGCCUa -3' miRNA: 3'- -AGUCGAGUuCCG--GCUACUCGu-GUGGG- -5' |
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24809 | 5' | -55.1 | NC_005284.1 | + | 52143 | 1.13 | 0.000477 |
Target: 5'- aUCAGCUCAAGGCCGAUGAGCACACCCg -3' miRNA: 3'- -AGUCGAGUUCCGGCUACUCGUGUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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