Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24810 | 3' | -56.6 | NC_005284.1 | + | 50746 | 1.09 | 0.000731 |
Target: 5'- gGAAGCGAUGGCAAUCCGCCGUGCGCGa -3' miRNA: 3'- -CUUCGCUACCGUUAGGCGGCACGCGC- -5' |
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24810 | 3' | -56.6 | NC_005284.1 | + | 21742 | 0.81 | 0.075776 |
Target: 5'- -cGGCGAUGGUGugugCCGCCaGUGCGCGg -3' miRNA: 3'- cuUCGCUACCGUua--GGCGG-CACGCGC- -5' |
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24810 | 3' | -56.6 | NC_005284.1 | + | 21402 | 0.74 | 0.234701 |
Target: 5'- cGGGUGAUGGCGAgCCGUCGgcaGCGCc -3' miRNA: 3'- cUUCGCUACCGUUaGGCGGCa--CGCGc -5' |
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24810 | 3' | -56.6 | NC_005284.1 | + | 37789 | 0.72 | 0.280755 |
Target: 5'- --cGCGucGGCGAUCguCGCCGUGUGCGc -3' miRNA: 3'- cuuCGCuaCCGUUAG--GCGGCACGCGC- -5' |
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24810 | 3' | -56.6 | NC_005284.1 | + | 46118 | 0.71 | 0.325709 |
Target: 5'- -cGGCGuucgaGGCAaacgccgcAUCCGCUGUGCGCc -3' miRNA: 3'- cuUCGCua---CCGU--------UAGGCGGCACGCGc -5' |
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24810 | 3' | -56.6 | NC_005284.1 | + | 20406 | 0.71 | 0.367093 |
Target: 5'- cGAAGUGAUGaCca--CGCCGUGUGCGg -3' miRNA: 3'- -CUUCGCUACcGuuagGCGGCACGCGC- -5' |
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24810 | 3' | -56.6 | NC_005284.1 | + | 12386 | 0.71 | 0.350114 |
Target: 5'- gGGAGCGcgGGaggagggGAUUCGCCG-GCGCGc -3' miRNA: 3'- -CUUCGCuaCCg------UUAGGCGGCaCGCGC- -5' |
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24810 | 3' | -56.6 | NC_005284.1 | + | 30986 | 0.71 | 0.367093 |
Target: 5'- -cGGCGuaguucgaacUGGCGcuugCCGCCGUGCGUGc -3' miRNA: 3'- cuUCGCu---------ACCGUua--GGCGGCACGCGC- -5' |
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24810 | 3' | -56.6 | NC_005284.1 | + | 13308 | 0.7 | 0.375793 |
Target: 5'- uGAAGaacUGGCAcgUCGCCGaGCGCGg -3' miRNA: 3'- -CUUCgcuACCGUuaGGCGGCaCGCGC- -5' |
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24810 | 3' | -56.6 | NC_005284.1 | + | 14582 | 0.7 | 0.38463 |
Target: 5'- --uGCGcuUGGCGAUCuCGUCG-GCGCGa -3' miRNA: 3'- cuuCGCu-ACCGUUAG-GCGGCaCGCGC- -5' |
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24810 | 3' | -56.6 | NC_005284.1 | + | 44099 | 0.69 | 0.430825 |
Target: 5'- cGAAGCGA-GGC---CCGCCGUGUcgaucGCGc -3' miRNA: 3'- -CUUCGCUaCCGuuaGGCGGCACG-----CGC- -5' |
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24810 | 3' | -56.6 | NC_005284.1 | + | 9751 | 0.69 | 0.47003 |
Target: 5'- cGAAGCGcgGGCGGUCgaGgCGacgGCGCa -3' miRNA: 3'- -CUUCGCuaCCGUUAGg-CgGCa--CGCGc -5' |
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24810 | 3' | -56.6 | NC_005284.1 | + | 12322 | 0.68 | 0.490303 |
Target: 5'- uGAGCGAUugaacgcagggaGGCGAUCCGgCUucGCGCGa -3' miRNA: 3'- cUUCGCUA------------CCGUUAGGC-GGcaCGCGC- -5' |
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24810 | 3' | -56.6 | NC_005284.1 | + | 6817 | 0.68 | 0.531998 |
Target: 5'- cGAGGcCGAgggGGCGAUUCGCaccgaGUugGCGCGc -3' miRNA: 3'- -CUUC-GCUa--CCGUUAGGCGg----CA--CGCGC- -5' |
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24810 | 3' | -56.6 | NC_005284.1 | + | 15477 | 0.68 | 0.480114 |
Target: 5'- --cGCGAcUGGUAucUCGCCGaGCGCGg -3' miRNA: 3'- cuuCGCU-ACCGUuaGGCGGCaCGCGC- -5' |
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24810 | 3' | -56.6 | NC_005284.1 | + | 10640 | 0.68 | 0.479101 |
Target: 5'- cGAGCGgcGGCGAagCGCUgcgcgaggaacugGUGCGCGc -3' miRNA: 3'- cUUCGCuaCCGUUagGCGG-------------CACGCGC- -5' |
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24810 | 3' | -56.6 | NC_005284.1 | + | 1376 | 0.67 | 0.585762 |
Target: 5'- aGggGaCGAUuGGacCGAUCCGCgCGUGCugGCGa -3' miRNA: 3'- -CuuC-GCUA-CC--GUUAGGCG-GCACG--CGC- -5' |
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24810 | 3' | -56.6 | NC_005284.1 | + | 49322 | 0.67 | 0.5749 |
Target: 5'- -cGGCGAUGGUuggcaCgGCacgCGUGCGCGa -3' miRNA: 3'- cuUCGCUACCGuua--GgCG---GCACGCGC- -5' |
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24810 | 3' | -56.6 | NC_005284.1 | + | 51413 | 0.67 | 0.553325 |
Target: 5'- gGAAGUGcgGGCAcagugugCUGCCGUggugaGUGCGg -3' miRNA: 3'- -CUUCGCuaCCGUua-----GGCGGCA-----CGCGC- -5' |
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24810 | 3' | -56.6 | NC_005284.1 | + | 38575 | 0.67 | 0.553325 |
Target: 5'- cGAGCGAgacGGCcguUCgGCCGaGCGCa -3' miRNA: 3'- cUUCGCUa--CCGuu-AGgCGGCaCGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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