miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24810 3' -56.6 NC_005284.1 + 1376 0.67 0.585762
Target:  5'- aGggGaCGAUuGGacCGAUCCGCgCGUGCugGCGa -3'
miRNA:   3'- -CuuC-GCUA-CC--GUUAGGCG-GCACG--CGC- -5'
24810 3' -56.6 NC_005284.1 + 6568 0.66 0.629506
Target:  5'- --uGCGAaGGUGAUCCGUgaCGagGCGCGu -3'
miRNA:   3'- cuuCGCUaCCGUUAGGCG--GCa-CGCGC- -5'
24810 3' -56.6 NC_005284.1 + 6817 0.68 0.531998
Target:  5'- cGAGGcCGAgggGGCGAUUCGCaccgaGUugGCGCGc -3'
miRNA:   3'- -CUUC-GCUa--CCGUUAGGCGg----CA--CGCGC- -5'
24810 3' -56.6 NC_005284.1 + 8513 0.67 0.553325
Target:  5'- --cGCuGAUGGCu-UCCGCCGacaucggacGCGCGu -3'
miRNA:   3'- cuuCG-CUACCGuuAGGCGGCa--------CGCGC- -5'
24810 3' -56.6 NC_005284.1 + 9751 0.69 0.47003
Target:  5'- cGAAGCGcgGGCGGUCgaGgCGacgGCGCa -3'
miRNA:   3'- -CUUCGCuaCCGUUAGg-CgGCa--CGCGc -5'
24810 3' -56.6 NC_005284.1 + 10640 0.68 0.479101
Target:  5'- cGAGCGgcGGCGAagCGCUgcgcgaggaacugGUGCGCGc -3'
miRNA:   3'- cUUCGCuaCCGUUagGCGG-------------CACGCGC- -5'
24810 3' -56.6 NC_005284.1 + 12322 0.68 0.490303
Target:  5'- uGAGCGAUugaacgcagggaGGCGAUCCGgCUucGCGCGa -3'
miRNA:   3'- cUUCGCUA------------CCGUUAGGC-GGcaCGCGC- -5'
24810 3' -56.6 NC_005284.1 + 12386 0.71 0.350114
Target:  5'- gGGAGCGcgGGaggagggGAUUCGCCG-GCGCGc -3'
miRNA:   3'- -CUUCGCuaCCg------UUAGGCGGCaCGCGC- -5'
24810 3' -56.6 NC_005284.1 + 13308 0.7 0.375793
Target:  5'- uGAAGaacUGGCAcgUCGCCGaGCGCGg -3'
miRNA:   3'- -CUUCgcuACCGUuaGGCGGCaCGCGC- -5'
24810 3' -56.6 NC_005284.1 + 14582 0.7 0.38463
Target:  5'- --uGCGcuUGGCGAUCuCGUCG-GCGCGa -3'
miRNA:   3'- cuuCGCu-ACCGUUAG-GCGGCaCGCGC- -5'
24810 3' -56.6 NC_005284.1 + 15477 0.68 0.480114
Target:  5'- --cGCGAcUGGUAucUCGCCGaGCGCGg -3'
miRNA:   3'- cuuCGCU-ACCGUuaGGCGGCaCGCGC- -5'
24810 3' -56.6 NC_005284.1 + 20406 0.71 0.367093
Target:  5'- cGAAGUGAUGaCca--CGCCGUGUGCGg -3'
miRNA:   3'- -CUUCGCUACcGuuagGCGGCACGCGC- -5'
24810 3' -56.6 NC_005284.1 + 21328 0.66 0.629506
Target:  5'- cGGGCGAcUGGCGGggCGCgUGUcGCGCGa -3'
miRNA:   3'- cUUCGCU-ACCGUUagGCG-GCA-CGCGC- -5'
24810 3' -56.6 NC_005284.1 + 21402 0.74 0.234701
Target:  5'- cGGGUGAUGGCGAgCCGUCGgcaGCGCc -3'
miRNA:   3'- cUUCGCUACCGUUaGGCGGCa--CGCGc -5'
24810 3' -56.6 NC_005284.1 + 21742 0.81 0.075776
Target:  5'- -cGGCGAUGGUGugugCCGCCaGUGCGCGg -3'
miRNA:   3'- cuUCGCUACCGUua--GGCGG-CACGCGC- -5'
24810 3' -56.6 NC_005284.1 + 26505 0.67 0.590118
Target:  5'- -uGGCGAUccagucugaugcaucGGCAGUUCGCCGcGcCGCu -3'
miRNA:   3'- cuUCGCUA---------------CCGUUAGGCGGCaC-GCGc -5'
24810 3' -56.6 NC_005284.1 + 27589 0.66 0.640472
Target:  5'- aAAGCGAaggccgagGGCAAagcgCCGCCGauuaUGCGUa -3'
miRNA:   3'- cUUCGCUa-------CCGUUa---GGCGGC----ACGCGc -5'
24810 3' -56.6 NC_005284.1 + 30358 0.66 0.596662
Target:  5'- cGAGGCGAUcgagcgcgagGGCGAUgCGCucggcccgCGUGUGCu -3'
miRNA:   3'- -CUUCGCUA----------CCGUUAgGCG--------GCACGCGc -5'
24810 3' -56.6 NC_005284.1 + 30986 0.71 0.367093
Target:  5'- -cGGCGuaguucgaacUGGCGcuugCCGCCGUGCGUGc -3'
miRNA:   3'- cuUCGCu---------ACCGUua--GGCGGCACGCGC- -5'
24810 3' -56.6 NC_005284.1 + 32971 0.66 0.595571
Target:  5'- gGAAGCGccgGGCAcgCCgucgccaccggcuGCCGUGCaGUGu -3'
miRNA:   3'- -CUUCGCua-CCGUuaGG-------------CGGCACG-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.