miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24810 3' -56.6 NC_005284.1 + 53651 0.66 0.618544
Target:  5'- uGGAGCacGAUGGCGAcgCGCCGU-CGCc -3'
miRNA:   3'- -CUUCG--CUACCGUUagGCGGCAcGCGc -5'
24810 3' -56.6 NC_005284.1 + 51413 0.67 0.553325
Target:  5'- gGAAGUGcgGGCAcagugugCUGCCGUggugaGUGCGg -3'
miRNA:   3'- -CUUCGCuaCCGUua-----GGCGGCA-----CGCGC- -5'
24810 3' -56.6 NC_005284.1 + 50746 1.09 0.000731
Target:  5'- gGAAGCGAUGGCAAUCCGCCGUGCGCGa -3'
miRNA:   3'- -CUUCGCUACCGUUAGGCGGCACGCGC- -5'
24810 3' -56.6 NC_005284.1 + 49322 0.67 0.5749
Target:  5'- -cGGCGAUGGUuggcaCgGCacgCGUGCGCGa -3'
miRNA:   3'- cuUCGCUACCGuua--GgCG---GCACGCGC- -5'
24810 3' -56.6 NC_005284.1 + 46118 0.71 0.325709
Target:  5'- -cGGCGuucgaGGCAaacgccgcAUCCGCUGUGCGCc -3'
miRNA:   3'- cuUCGCua---CCGU--------UAGGCGGCACGCGc -5'
24810 3' -56.6 NC_005284.1 + 45642 0.67 0.542627
Target:  5'- cGggGCaGGcUGGCGGcUCGUCGgUGCGCGa -3'
miRNA:   3'- -CuuCG-CU-ACCGUUaGGCGGC-ACGCGC- -5'
24810 3' -56.6 NC_005284.1 + 44099 0.69 0.430825
Target:  5'- cGAAGCGA-GGC---CCGCCGUGUcgaucGCGc -3'
miRNA:   3'- -CUUCGCUaCCGuuaGGCGGCACG-----CGC- -5'
24810 3' -56.6 NC_005284.1 + 43820 0.66 0.651429
Target:  5'- uAAGCG--GGa---CCGCCGUGCGCc -3'
miRNA:   3'- cUUCGCuaCCguuaGGCGGCACGCGc -5'
24810 3' -56.6 NC_005284.1 + 38972 0.67 0.542627
Target:  5'- --cGCGAUGcUGAUCCGCgGgcUGCGCGc -3'
miRNA:   3'- cuuCGCUACcGUUAGGCGgC--ACGCGC- -5'
24810 3' -56.6 NC_005284.1 + 38575 0.67 0.553325
Target:  5'- cGAGCGAgacGGCcguUCgGCCGaGCGCa -3'
miRNA:   3'- cUUCGCUa--CCGuu-AGgCGGCaCGCGc -5'
24810 3' -56.6 NC_005284.1 + 37789 0.72 0.280755
Target:  5'- --cGCGucGGCGAUCguCGCCGUGUGCGc -3'
miRNA:   3'- cuuCGCuaCCGUUAG--GCGGCACGCGC- -5'
24810 3' -56.6 NC_005284.1 + 32971 0.66 0.595571
Target:  5'- gGAAGCGccgGGCAcgCCgucgccaccggcuGCCGUGCaGUGu -3'
miRNA:   3'- -CUUCGCua-CCGUuaGG-------------CGGCACG-CGC- -5'
24810 3' -56.6 NC_005284.1 + 30986 0.71 0.367093
Target:  5'- -cGGCGuaguucgaacUGGCGcuugCCGCCGUGCGUGc -3'
miRNA:   3'- cuUCGCu---------ACCGUua--GGCGGCACGCGC- -5'
24810 3' -56.6 NC_005284.1 + 30358 0.66 0.596662
Target:  5'- cGAGGCGAUcgagcgcgagGGCGAUgCGCucggcccgCGUGUGCu -3'
miRNA:   3'- -CUUCGCUA----------CCGUUAgGCG--------GCACGCGc -5'
24810 3' -56.6 NC_005284.1 + 27589 0.66 0.640472
Target:  5'- aAAGCGAaggccgagGGCAAagcgCCGCCGauuaUGCGUa -3'
miRNA:   3'- cUUCGCUa-------CCGUUa---GGCGGC----ACGCGc -5'
24810 3' -56.6 NC_005284.1 + 26505 0.67 0.590118
Target:  5'- -uGGCGAUccagucugaugcaucGGCAGUUCGCCGcGcCGCu -3'
miRNA:   3'- cuUCGCUA---------------CCGUUAGGCGGCaC-GCGc -5'
24810 3' -56.6 NC_005284.1 + 21742 0.81 0.075776
Target:  5'- -cGGCGAUGGUGugugCCGCCaGUGCGCGg -3'
miRNA:   3'- cuUCGCUACCGUua--GGCGG-CACGCGC- -5'
24810 3' -56.6 NC_005284.1 + 21402 0.74 0.234701
Target:  5'- cGGGUGAUGGCGAgCCGUCGgcaGCGCc -3'
miRNA:   3'- cUUCGCUACCGUUaGGCGGCa--CGCGc -5'
24810 3' -56.6 NC_005284.1 + 21328 0.66 0.629506
Target:  5'- cGGGCGAcUGGCGGggCGCgUGUcGCGCGa -3'
miRNA:   3'- cUUCGCU-ACCGUUagGCG-GCA-CGCGC- -5'
24810 3' -56.6 NC_005284.1 + 20406 0.71 0.367093
Target:  5'- cGAAGUGAUGaCca--CGCCGUGUGCGg -3'
miRNA:   3'- -CUUCGCUACcGuuagGCGGCACGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.