miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24812 3' -51.6 NC_005284.1 + 15736 0.66 0.898481
Target:  5'- -cGCGcgCGGUGUGGggCGGAaugugGGCCGAc -3'
miRNA:   3'- aaCGCuaGCUGCAUUa-GCCU-----UCGGCU- -5'
24812 3' -51.6 NC_005284.1 + 38701 0.66 0.898481
Target:  5'- --uCGAUgGACGU-AUCGGcuGCCGGc -3'
miRNA:   3'- aacGCUAgCUGCAuUAGCCuuCGGCU- -5'
24812 3' -51.6 NC_005284.1 + 19627 0.66 0.89119
Target:  5'- -cGCGAUCGcacACGgcAUacaaCGGA-GCCGAc -3'
miRNA:   3'- aaCGCUAGC---UGCauUA----GCCUuCGGCU- -5'
24812 3' -51.6 NC_005284.1 + 40857 0.66 0.89119
Target:  5'- aUUGUuuUUGGCG-GAUCGGAuuGCCGAg -3'
miRNA:   3'- -AACGcuAGCUGCaUUAGCCUu-CGGCU- -5'
24812 3' -51.6 NC_005284.1 + 5977 0.66 0.89119
Target:  5'- -cGCG-UCGACGggaaccAGUCGGGcAGCuCGAu -3'
miRNA:   3'- aaCGCuAGCUGCa-----UUAGCCU-UCG-GCU- -5'
24812 3' -51.6 NC_005284.1 + 47282 0.66 0.876573
Target:  5'- aUUGCcGUCGACcgagaauucgcccgGAUCGGGcaAGCCGAg -3'
miRNA:   3'- -AACGcUAGCUGca------------UUAGCCU--UCGGCU- -5'
24812 3' -51.6 NC_005284.1 + 35543 0.67 0.850678
Target:  5'- -cGCGGUCG-CGaGGUCG--AGCCGAa -3'
miRNA:   3'- aaCGCUAGCuGCaUUAGCcuUCGGCU- -5'
24812 3' -51.6 NC_005284.1 + 32554 0.67 0.841815
Target:  5'- -cGCGAacaccUCGACGUAAcagucgugcuUCGGaAAGCgCGGg -3'
miRNA:   3'- aaCGCU-----AGCUGCAUU----------AGCC-UUCG-GCU- -5'
24812 3' -51.6 NC_005284.1 + 39505 0.67 0.841815
Target:  5'- gUGCGGUCcuCGUcGGUCGGcuguGCCGAu -3'
miRNA:   3'- aACGCUAGcuGCA-UUAGCCuu--CGGCU- -5'
24812 3' -51.6 NC_005284.1 + 16496 0.67 0.823398
Target:  5'- -cGCGAaggugcUCGACGUGAucUCGGcgGGGCCc- -3'
miRNA:   3'- aaCGCU------AGCUGCAUU--AGCC--UUCGGcu -5'
24812 3' -51.6 NC_005284.1 + 18441 0.68 0.813866
Target:  5'- -cGCGGcCGGCGcGAUCGaGAAGgCGAu -3'
miRNA:   3'- aaCGCUaGCUGCaUUAGC-CUUCgGCU- -5'
24812 3' -51.6 NC_005284.1 + 21353 0.68 0.794205
Target:  5'- -cGCGAUCaACG-AGUCGGAcaacggucGGCCGc -3'
miRNA:   3'- aaCGCUAGcUGCaUUAGCCU--------UCGGCu -5'
24812 3' -51.6 NC_005284.1 + 45796 0.68 0.7841
Target:  5'- cUUGCuGAUCGugGUGAcaagCGG--GCCGAc -3'
miRNA:   3'- -AACG-CUAGCugCAUUa---GCCuuCGGCU- -5'
24812 3' -51.6 NC_005284.1 + 16840 0.68 0.7841
Target:  5'- aUGCGAUCGACuu-GUCGGucgacGGCgGGu -3'
miRNA:   3'- aACGCUAGCUGcauUAGCCu----UCGgCU- -5'
24812 3' -51.6 NC_005284.1 + 9469 0.68 0.772792
Target:  5'- gUGUGAUCGGCGUGAcgauaaggcgcauUCGGcuacucAGCCa- -3'
miRNA:   3'- aACGCUAGCUGCAUU-------------AGCCu-----UCGGcu -5'
24812 3' -51.6 NC_005284.1 + 25952 0.69 0.752831
Target:  5'- --aUGGUCaGACGUgGAUCGcGAGGCCGGg -3'
miRNA:   3'- aacGCUAG-CUGCA-UUAGC-CUUCGGCU- -5'
24812 3' -51.6 NC_005284.1 + 21004 0.69 0.731313
Target:  5'- -cGCGAUCGACuacgaAGUCGGc-GCCGGc -3'
miRNA:   3'- aaCGCUAGCUGca---UUAGCCuuCGGCU- -5'
24812 3' -51.6 NC_005284.1 + 4172 0.69 0.72039
Target:  5'- -gGCGAaCGACGUGaAUCGGcuGCuCGAc -3'
miRNA:   3'- aaCGCUaGCUGCAU-UAGCCuuCG-GCU- -5'
24812 3' -51.6 NC_005284.1 + 47697 0.7 0.698279
Target:  5'- --aCGAUCGACugccaAGUCGGcAAGCCGAu -3'
miRNA:   3'- aacGCUAGCUGca---UUAGCC-UUCGGCU- -5'
24812 3' -51.6 NC_005284.1 + 19407 0.7 0.687115
Target:  5'- -gGCGGUgcaGGCGUGAUCGGcgcGCCGu -3'
miRNA:   3'- aaCGCUAg--CUGCAUUAGCCuu-CGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.