Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24813 | 5' | -53.1 | NC_005284.1 | + | 48750 | 1.15 | 0.000831 |
Target: 5'- cCCCGAGACAACGUCCUCGCGAAAGGCg -3' miRNA: 3'- -GGGCUCUGUUGCAGGAGCGCUUUCCG- -5' |
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24813 | 5' | -53.1 | NC_005284.1 | + | 47780 | 0.74 | 0.408416 |
Target: 5'- aUCGAGGCGGCG--CUCGCG-GAGGCg -3' miRNA: 3'- gGGCUCUGUUGCagGAGCGCuUUCCG- -5' |
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24813 | 5' | -53.1 | NC_005284.1 | + | 38766 | 0.74 | 0.417752 |
Target: 5'- gUCGAGGCAAUGUCCggcgaaguagUUGCGAucauGGCg -3' miRNA: 3'- gGGCUCUGUUGCAGG----------AGCGCUuu--CCG- -5' |
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24813 | 5' | -53.1 | NC_005284.1 | + | 17335 | 0.74 | 0.44652 |
Target: 5'- cCUCGcgccGACGAUGuUCCUCGCGGccGGCu -3' miRNA: 3'- -GGGCu---CUGUUGC-AGGAGCGCUuuCCG- -5' |
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24813 | 5' | -53.1 | NC_005284.1 | + | 23865 | 0.73 | 0.476357 |
Target: 5'- uCCCGAGGCAAU-UCCUgaguaugaGCGAGcgGGGCa -3' miRNA: 3'- -GGGCUCUGUUGcAGGAg-------CGCUU--UCCG- -5' |
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24813 | 5' | -53.1 | NC_005284.1 | + | 29968 | 0.72 | 0.517606 |
Target: 5'- -gCGAGACAGCGUCCcgagUGUGGAuuGCg -3' miRNA: 3'- ggGCUCUGUUGCAGGa---GCGCUUucCG- -5' |
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24813 | 5' | -53.1 | NC_005284.1 | + | 10690 | 0.71 | 0.560206 |
Target: 5'- aUCGAcACGGCGggCCUCGCuucgcaGAAAGGCg -3' miRNA: 3'- gGGCUcUGUUGCa-GGAGCG------CUUUCCG- -5' |
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24813 | 5' | -53.1 | NC_005284.1 | + | 41374 | 0.71 | 0.578616 |
Target: 5'- gCCGAGAC-ACGcCCgcggucacgauguuUCGCGAGuGGCu -3' miRNA: 3'- gGGCUCUGuUGCaGG--------------AGCGCUUuCCG- -5' |
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24813 | 5' | -53.1 | NC_005284.1 | + | 27526 | 0.71 | 0.581879 |
Target: 5'- gUCGAGGCGu--UCCUCGCGggGuucGGCu -3' miRNA: 3'- gGGCUCUGUugcAGGAGCGCuuU---CCG- -5' |
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24813 | 5' | -53.1 | NC_005284.1 | + | 41954 | 0.71 | 0.603718 |
Target: 5'- uUCGcAGACGAagaGUCCgcgggCGCGAAGcGGCg -3' miRNA: 3'- gGGC-UCUGUUg--CAGGa----GCGCUUU-CCG- -5' |
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24813 | 5' | -53.1 | NC_005284.1 | + | 3198 | 0.69 | 0.680416 |
Target: 5'- gCCGGGgaACGACGgcUCCagccaaCGCGAAAGGUu -3' miRNA: 3'- gGGCUC--UGUUGC--AGGa-----GCGCUUUCCG- -5' |
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24813 | 5' | -53.1 | NC_005284.1 | + | 39117 | 0.69 | 0.712808 |
Target: 5'- aCCGAGAUAcACGcCCgCGUGAuucGGCa -3' miRNA: 3'- gGGCUCUGU-UGCaGGaGCGCUuu-CCG- -5' |
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24813 | 5' | -53.1 | NC_005284.1 | + | 44228 | 0.69 | 0.712808 |
Target: 5'- gCCGAGGuuCGACGUCUUgagGCGAuccAGGCc -3' miRNA: 3'- gGGCUCU--GUUGCAGGAg--CGCUu--UCCG- -5' |
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24813 | 5' | -53.1 | NC_005284.1 | + | 11840 | 0.69 | 0.723462 |
Target: 5'- uCUCGAG-CAGCGg-CUCGCGuugcAGGCc -3' miRNA: 3'- -GGGCUCuGUUGCagGAGCGCuu--UCCG- -5' |
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24813 | 5' | -53.1 | NC_005284.1 | + | 18728 | 0.68 | 0.734026 |
Target: 5'- aUCCGcAGGCGucgACGUCguaucaggggCUCGCGGucGGGCa -3' miRNA: 3'- -GGGC-UCUGU---UGCAG----------GAGCGCUu-UCCG- -5' |
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24813 | 5' | -53.1 | NC_005284.1 | + | 42728 | 0.68 | 0.744488 |
Target: 5'- aCCUGAGACAucgccgcacGCG-CCgaaaaccgCGCGAGGucGGCg -3' miRNA: 3'- -GGGCUCUGU---------UGCaGGa-------GCGCUUU--CCG- -5' |
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24813 | 5' | -53.1 | NC_005284.1 | + | 48956 | 0.68 | 0.744488 |
Target: 5'- aUCGucGGCAaccccuGCGUCCUCGCGc-AGGUg -3' miRNA: 3'- gGGCu-CUGU------UGCAGGAGCGCuuUCCG- -5' |
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24813 | 5' | -53.1 | NC_005284.1 | + | 19121 | 0.68 | 0.754836 |
Target: 5'- -aUGAGACGACa-CCgcgCGCGAAcGGCa -3' miRNA: 3'- ggGCUCUGUUGcaGGa--GCGCUUuCCG- -5' |
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24813 | 5' | -53.1 | NC_005284.1 | + | 2720 | 0.68 | 0.765061 |
Target: 5'- gCCCGAuGACgAGCGcUCCcccuccgugaUUGCGcAAGGCa -3' miRNA: 3'- -GGGCU-CUG-UUGC-AGG----------AGCGCuUUCCG- -5' |
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24813 | 5' | -53.1 | NC_005284.1 | + | 26280 | 0.68 | 0.765061 |
Target: 5'- aCCGAccuACGuCGUCCUCGau-AAGGCa -3' miRNA: 3'- gGGCUc--UGUuGCAGGAGCgcuUUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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