miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24813 5' -53.1 NC_005284.1 + 2720 0.68 0.765061
Target:  5'- gCCCGAuGACgAGCGcUCCcccuccgugaUUGCGcAAGGCa -3'
miRNA:   3'- -GGGCU-CUG-UUGC-AGG----------AGCGCuUUCCG- -5'
24813 5' -53.1 NC_005284.1 + 3198 0.69 0.680416
Target:  5'- gCCGGGgaACGACGgcUCCagccaaCGCGAAAGGUu -3'
miRNA:   3'- gGGCUC--UGUUGC--AGGa-----GCGCUUUCCG- -5'
24813 5' -53.1 NC_005284.1 + 8434 0.66 0.869395
Target:  5'- gCCGAGAuggucCGGCGagCC-CGCGAcggcggagggagaggAAGGCg -3'
miRNA:   3'- gGGCUCU-----GUUGCa-GGaGCGCU---------------UUCCG- -5'
24813 5' -53.1 NC_005284.1 + 9850 0.66 0.849658
Target:  5'- gCCCuacGCGGCGaucaUCgCUCGCGAGAcGGCa -3'
miRNA:   3'- -GGGcucUGUUGC----AG-GAGCGCUUU-CCG- -5'
24813 5' -53.1 NC_005284.1 + 10006 0.67 0.804486
Target:  5'- gCCGAGACGgaccGCGgCCUUGCGcAAGccgaGCg -3'
miRNA:   3'- gGGCUCUGU----UGCaGGAGCGCuUUC----CG- -5'
24813 5' -53.1 NC_005284.1 + 10690 0.71 0.560206
Target:  5'- aUCGAcACGGCGggCCUCGCuucgcaGAAAGGCg -3'
miRNA:   3'- gGGCUcUGUUGCa-GGAGCG------CUUUCCG- -5'
24813 5' -53.1 NC_005284.1 + 11639 0.66 0.865396
Target:  5'- aCUCGGGGCGAUGUCgaugggugacaaCgcgCGCGAGcugaaucAGGCc -3'
miRNA:   3'- -GGGCUCUGUUGCAG------------Ga--GCGCUU-------UCCG- -5'
24813 5' -53.1 NC_005284.1 + 11840 0.69 0.723462
Target:  5'- uCUCGAG-CAGCGg-CUCGCGuugcAGGCc -3'
miRNA:   3'- -GGGCUCuGUUGCagGAGCGCuu--UCCG- -5'
24813 5' -53.1 NC_005284.1 + 17335 0.74 0.44652
Target:  5'- cCUCGcgccGACGAUGuUCCUCGCGGccGGCu -3'
miRNA:   3'- -GGGCu---CUGUUGC-AGGAGCGCUuuCCG- -5'
24813 5' -53.1 NC_005284.1 + 17376 0.66 0.849658
Target:  5'- uCCCGGccGGCuACGUCggUGUGAAGGuGCa -3'
miRNA:   3'- -GGGCU--CUGuUGCAGgaGCGCUUUC-CG- -5'
24813 5' -53.1 NC_005284.1 + 18728 0.68 0.734026
Target:  5'- aUCCGcAGGCGucgACGUCguaucaggggCUCGCGGucGGGCa -3'
miRNA:   3'- -GGGC-UCUGU---UGCAG----------GAGCGCUu-UCCG- -5'
24813 5' -53.1 NC_005284.1 + 19121 0.68 0.754836
Target:  5'- -aUGAGACGACa-CCgcgCGCGAAcGGCa -3'
miRNA:   3'- ggGCUCUGUUGcaGGa--GCGCUUuCCG- -5'
24813 5' -53.1 NC_005284.1 + 21256 0.66 0.866201
Target:  5'- gCUCGaAGAUGA--UCUUCGCGAAGcGGCa -3'
miRNA:   3'- -GGGC-UCUGUUgcAGGAGCGCUUU-CCG- -5'
24813 5' -53.1 NC_005284.1 + 23865 0.73 0.476357
Target:  5'- uCCCGAGGCAAU-UCCUgaguaugaGCGAGcgGGGCa -3'
miRNA:   3'- -GGGCUCUGUUGcAGGAg-------CGCUU--UCCG- -5'
24813 5' -53.1 NC_005284.1 + 24335 0.66 0.858047
Target:  5'- -gUGGGGCAACG-CUuaUCGCGucgcAAGGCu -3'
miRNA:   3'- ggGCUCUGUUGCaGG--AGCGCu---UUCCG- -5'
24813 5' -53.1 NC_005284.1 + 25074 0.66 0.849658
Target:  5'- gCCUGAuGACGcCGgccgaCCUCGCGAucgucaccGGCa -3'
miRNA:   3'- -GGGCU-CUGUuGCa----GGAGCGCUuu------CCG- -5'
24813 5' -53.1 NC_005284.1 + 26280 0.68 0.765061
Target:  5'- aCCGAccuACGuCGUCCUCGau-AAGGCa -3'
miRNA:   3'- gGGCUc--UGUuGCAGGAGCgcuUUCCG- -5'
24813 5' -53.1 NC_005284.1 + 27526 0.71 0.581879
Target:  5'- gUCGAGGCGu--UCCUCGCGggGuucGGCu -3'
miRNA:   3'- gGGCUCUGUugcAGGAGCGCuuU---CCG- -5'
24813 5' -53.1 NC_005284.1 + 29968 0.72 0.517606
Target:  5'- -gCGAGACAGCGUCCcgagUGUGGAuuGCg -3'
miRNA:   3'- ggGCUCUGUUGCAGGa---GCGCUUucCG- -5'
24813 5' -53.1 NC_005284.1 + 30793 0.67 0.793902
Target:  5'- aCCGAcGAUAGuccggauCGUCCcgaUCGCGGucguAGGCg -3'
miRNA:   3'- gGGCU-CUGUU-------GCAGG---AGCGCUu---UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.