miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24813 5' -53.1 NC_005284.1 + 54384 0.67 0.794872
Target:  5'- aCCGGGGguGCGgugcgcUCgUCGCGAAuGGUa -3'
miRNA:   3'- gGGCUCUguUGC------AGgAGCGCUUuCCG- -5'
24813 5' -53.1 NC_005284.1 + 54287 0.67 0.832208
Target:  5'- gCCGAG-CAGC---UUCGCGAAAGGg -3'
miRNA:   3'- gGGCUCuGUUGcagGAGCGCUUUCCg -5'
24813 5' -53.1 NC_005284.1 + 52988 0.67 0.823164
Target:  5'- gCCGAGGCAA-----UCGCGguGGGCa -3'
miRNA:   3'- gGGCUCUGUUgcaggAGCGCuuUCCG- -5'
24813 5' -53.1 NC_005284.1 + 50941 0.66 0.858047
Target:  5'- uUCCGcGAUAcGCGaUCCUUGCGuucGGCg -3'
miRNA:   3'- -GGGCuCUGU-UGC-AGGAGCGCuuuCCG- -5'
24813 5' -53.1 NC_005284.1 + 48956 0.68 0.744488
Target:  5'- aUCGucGGCAaccccuGCGUCCUCGCGc-AGGUg -3'
miRNA:   3'- gGGCu-CUGU------UGCAGGAGCGCuuUCCG- -5'
24813 5' -53.1 NC_005284.1 + 48750 1.15 0.000831
Target:  5'- cCCCGAGACAACGUCCUCGCGAAAGGCg -3'
miRNA:   3'- -GGGCUCUGUUGCAGGAGCGCUUUCCG- -5'
24813 5' -53.1 NC_005284.1 + 48512 0.67 0.78509
Target:  5'- uCCCGAGACGACGuacUCCUUcccacucaaaaaGCGAAc--- -3'
miRNA:   3'- -GGGCUCUGUUGC---AGGAG------------CGCUUuccg -5'
24813 5' -53.1 NC_005284.1 + 48328 0.66 0.858047
Target:  5'- aUCCGgaAGGCGGCGgcgagaugaUUCUCGCGcu-GGCa -3'
miRNA:   3'- -GGGC--UCUGUUGC---------AGGAGCGCuuuCCG- -5'
24813 5' -53.1 NC_005284.1 + 47780 0.74 0.408416
Target:  5'- aUCGAGGCGGCG--CUCGCG-GAGGCg -3'
miRNA:   3'- gGGCUCUGUUGCagGAGCGCuUUCCG- -5'
24813 5' -53.1 NC_005284.1 + 47256 0.67 0.794872
Target:  5'- aCCCgGAGACgGGCGagaaCCUCGUGAucgacGGCc -3'
miRNA:   3'- -GGG-CUCUG-UUGCa---GGAGCGCUuu---CCG- -5'
24813 5' -53.1 NC_005284.1 + 45615 0.67 0.81392
Target:  5'- gCCG-GACGAgggcggugcgaGUCUUCGCGGGgcAGGCu -3'
miRNA:   3'- gGGCuCUGUUg----------CAGGAGCGCUU--UCCG- -5'
24813 5' -53.1 NC_005284.1 + 44228 0.69 0.712808
Target:  5'- gCCGAGGuuCGACGUCUUgagGCGAuccAGGCc -3'
miRNA:   3'- gGGCUCU--GUUGCAGGAg--CGCUu--UCCG- -5'
24813 5' -53.1 NC_005284.1 + 43983 0.67 0.78509
Target:  5'- uCgCGGGAUGACGcCCUCGgGuucaaugaaguaAGGGGCg -3'
miRNA:   3'- -GgGCUCUGUUGCaGGAGCgC------------UUUCCG- -5'
24813 5' -53.1 NC_005284.1 + 42728 0.68 0.744488
Target:  5'- aCCUGAGACAucgccgcacGCG-CCgaaaaccgCGCGAGGucGGCg -3'
miRNA:   3'- -GGGCUCUGU---------UGCaGGa-------GCGCUUU--CCG- -5'
24813 5' -53.1 NC_005284.1 + 41954 0.71 0.603718
Target:  5'- uUCGcAGACGAagaGUCCgcgggCGCGAAGcGGCg -3'
miRNA:   3'- gGGC-UCUGUUg--CAGGa----GCGCUUU-CCG- -5'
24813 5' -53.1 NC_005284.1 + 41374 0.71 0.578616
Target:  5'- gCCGAGAC-ACGcCCgcggucacgauguuUCGCGAGuGGCu -3'
miRNA:   3'- gGGCUCUGuUGCaGG--------------AGCGCUUuCCG- -5'
24813 5' -53.1 NC_005284.1 + 39213 0.67 0.794872
Target:  5'- gUCGAGAaagcCAGCGUCCUgauaGUGGuuGAGGUa -3'
miRNA:   3'- gGGCUCU----GUUGCAGGAg---CGCU--UUCCG- -5'
24813 5' -53.1 NC_005284.1 + 39117 0.69 0.712808
Target:  5'- aCCGAGAUAcACGcCCgCGUGAuucGGCa -3'
miRNA:   3'- gGGCUCUGU-UGCaGGaGCGCUuu-CCG- -5'
24813 5' -53.1 NC_005284.1 + 38766 0.74 0.417752
Target:  5'- gUCGAGGCAAUGUCCggcgaaguagUUGCGAucauGGCg -3'
miRNA:   3'- gGGCUCUGUUGCAGG----------AGCGCUuu--CCG- -5'
24813 5' -53.1 NC_005284.1 + 36092 0.66 0.841042
Target:  5'- gUCgGAGAacuuggucGCGUCgUCGCGAuucGGCg -3'
miRNA:   3'- -GGgCUCUgu------UGCAGgAGCGCUuu-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.