miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24813 5' -53.1 NC_005284.1 + 48512 0.67 0.78509
Target:  5'- uCCCGAGACGACGuacUCCUUcccacucaaaaaGCGAAc--- -3'
miRNA:   3'- -GGGCUCUGUUGC---AGGAG------------CGCUUuccg -5'
24813 5' -53.1 NC_005284.1 + 26280 0.68 0.765061
Target:  5'- aCCGAccuACGuCGUCCUCGau-AAGGCa -3'
miRNA:   3'- gGGCUc--UGUuGCAGGAGCgcuUUCCG- -5'
24813 5' -53.1 NC_005284.1 + 2720 0.68 0.765061
Target:  5'- gCCCGAuGACgAGCGcUCCcccuccgugaUUGCGcAAGGCa -3'
miRNA:   3'- -GGGCU-CUG-UUGC-AGG----------AGCGCuUUCCG- -5'
24813 5' -53.1 NC_005284.1 + 19121 0.68 0.754836
Target:  5'- -aUGAGACGACa-CCgcgCGCGAAcGGCa -3'
miRNA:   3'- ggGCUCUGUUGcaGGa--GCGCUUuCCG- -5'
24813 5' -53.1 NC_005284.1 + 42728 0.68 0.744488
Target:  5'- aCCUGAGACAucgccgcacGCG-CCgaaaaccgCGCGAGGucGGCg -3'
miRNA:   3'- -GGGCUCUGU---------UGCaGGa-------GCGCUUU--CCG- -5'
24813 5' -53.1 NC_005284.1 + 48956 0.68 0.744488
Target:  5'- aUCGucGGCAaccccuGCGUCCUCGCGc-AGGUg -3'
miRNA:   3'- gGGCu-CUGU------UGCAGGAGCGCuuUCCG- -5'
24813 5' -53.1 NC_005284.1 + 18728 0.68 0.734026
Target:  5'- aUCCGcAGGCGucgACGUCguaucaggggCUCGCGGucGGGCa -3'
miRNA:   3'- -GGGC-UCUGU---UGCAG----------GAGCGCUu-UCCG- -5'
24813 5' -53.1 NC_005284.1 + 11840 0.69 0.723462
Target:  5'- uCUCGAG-CAGCGg-CUCGCGuugcAGGCc -3'
miRNA:   3'- -GGGCUCuGUUGCagGAGCGCuu--UCCG- -5'
24813 5' -53.1 NC_005284.1 + 44228 0.69 0.712808
Target:  5'- gCCGAGGuuCGACGUCUUgagGCGAuccAGGCc -3'
miRNA:   3'- gGGCUCU--GUUGCAGGAg--CGCUu--UCCG- -5'
24813 5' -53.1 NC_005284.1 + 39117 0.69 0.712808
Target:  5'- aCCGAGAUAcACGcCCgCGUGAuucGGCa -3'
miRNA:   3'- gGGCUCUGU-UGCaGGaGCGCUuu-CCG- -5'
24813 5' -53.1 NC_005284.1 + 3198 0.69 0.680416
Target:  5'- gCCGGGgaACGACGgcUCCagccaaCGCGAAAGGUu -3'
miRNA:   3'- gGGCUC--UGUUGC--AGGa-----GCGCUUUCCG- -5'
24813 5' -53.1 NC_005284.1 + 41954 0.71 0.603718
Target:  5'- uUCGcAGACGAagaGUCCgcgggCGCGAAGcGGCg -3'
miRNA:   3'- gGGC-UCUGUUg--CAGGa----GCGCUUU-CCG- -5'
24813 5' -53.1 NC_005284.1 + 27526 0.71 0.581879
Target:  5'- gUCGAGGCGu--UCCUCGCGggGuucGGCu -3'
miRNA:   3'- gGGCUCUGUugcAGGAGCGCuuU---CCG- -5'
24813 5' -53.1 NC_005284.1 + 41374 0.71 0.578616
Target:  5'- gCCGAGAC-ACGcCCgcggucacgauguuUCGCGAGuGGCu -3'
miRNA:   3'- gGGCUCUGuUGCaGG--------------AGCGCUUuCCG- -5'
24813 5' -53.1 NC_005284.1 + 10690 0.71 0.560206
Target:  5'- aUCGAcACGGCGggCCUCGCuucgcaGAAAGGCg -3'
miRNA:   3'- gGGCUcUGUUGCa-GGAGCG------CUUUCCG- -5'
24813 5' -53.1 NC_005284.1 + 29968 0.72 0.517606
Target:  5'- -gCGAGACAGCGUCCcgagUGUGGAuuGCg -3'
miRNA:   3'- ggGCUCUGUUGCAGGa---GCGCUUucCG- -5'
24813 5' -53.1 NC_005284.1 + 23865 0.73 0.476357
Target:  5'- uCCCGAGGCAAU-UCCUgaguaugaGCGAGcgGGGCa -3'
miRNA:   3'- -GGGCUCUGUUGcAGGAg-------CGCUU--UCCG- -5'
24813 5' -53.1 NC_005284.1 + 17335 0.74 0.44652
Target:  5'- cCUCGcgccGACGAUGuUCCUCGCGGccGGCu -3'
miRNA:   3'- -GGGCu---CUGUUGC-AGGAGCGCUuuCCG- -5'
24813 5' -53.1 NC_005284.1 + 38766 0.74 0.417752
Target:  5'- gUCGAGGCAAUGUCCggcgaaguagUUGCGAucauGGCg -3'
miRNA:   3'- gGGCUCUGUUGCAGG----------AGCGCUuu--CCG- -5'
24813 5' -53.1 NC_005284.1 + 47780 0.74 0.408416
Target:  5'- aUCGAGGCGGCG--CUCGCG-GAGGCg -3'
miRNA:   3'- gGGCUCUGUUGCagGAGCGCuUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.