miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24814 5' -55.8 NC_005284.1 + 48575 1.12 0.000578
Target:  5'- cACCCAAUCACCGGGCAACGGUUCGCCg -3'
miRNA:   3'- -UGGGUUAGUGGCCCGUUGCCAAGCGG- -5'
24814 5' -55.8 NC_005284.1 + 33367 0.73 0.304064
Target:  5'- cGCCCGuucGUCgGCCGGcGCugccGACGGcUCGCCa -3'
miRNA:   3'- -UGGGU---UAG-UGGCC-CG----UUGCCaAGCGG- -5'
24814 5' -55.8 NC_005284.1 + 1117 0.72 0.368498
Target:  5'- cGCUgAuuggCAacCCGGGCGACGGcgcgUCGCCa -3'
miRNA:   3'- -UGGgUua--GU--GGCCCGUUGCCa---AGCGG- -5'
24814 5' -55.8 NC_005284.1 + 54362 0.72 0.376308
Target:  5'- cGCCCGAUgaagccgugcaagCACCgGGGguGCGGUgCGCUc -3'
miRNA:   3'- -UGGGUUA-------------GUGG-CCCguUGCCAaGCGG- -5'
24814 5' -55.8 NC_005284.1 + 41524 0.72 0.377183
Target:  5'- cACCCAGUCGCCGGcauucaGCAcguucaguugagACaGG-UCGCCg -3'
miRNA:   3'- -UGGGUUAGUGGCC------CGU------------UG-CCaAGCGG- -5'
24814 5' -55.8 NC_005284.1 + 35970 0.71 0.394961
Target:  5'- gGCCCcuUCGCCGGGaaccACGGcccgacgUUGCCg -3'
miRNA:   3'- -UGGGuuAGUGGCCCgu--UGCCa------AGCGG- -5'
24814 5' -55.8 NC_005284.1 + 2123 0.71 0.416997
Target:  5'- cGCCCGAUCAagcaGGGCAacgacaacaagauugACGGUgcugUCGCa -3'
miRNA:   3'- -UGGGUUAGUgg--CCCGU---------------UGCCA----AGCGg -5'
24814 5' -55.8 NC_005284.1 + 46025 0.71 0.419804
Target:  5'- gACCUAucuGUCGCCGGGCGucgagcaggccucgACGGcaagCGCUc -3'
miRNA:   3'- -UGGGU---UAGUGGCCCGU--------------UGCCaa--GCGG- -5'
24814 5' -55.8 NC_005284.1 + 30905 0.7 0.440731
Target:  5'- aGCCCAGUCgggaugcAUCGGGCGggcgccgugGCGcuUUCGCCg -3'
miRNA:   3'- -UGGGUUAG-------UGGCCCGU---------UGCc-AAGCGG- -5'
24814 5' -55.8 NC_005284.1 + 32952 0.7 0.480238
Target:  5'- cGCCCAcgccggcggcgcuGgaagCGCCGGGC-ACGccgUCGCCa -3'
miRNA:   3'- -UGGGU-------------Ua---GUGGCCCGuUGCca-AGCGG- -5'
24814 5' -55.8 NC_005284.1 + 47452 0.69 0.491404
Target:  5'- -gCCGAUCaACCGGGCcgagaaGAUGGcUCGCa -3'
miRNA:   3'- ugGGUUAG-UGGCCCG------UUGCCaAGCGg -5'
24814 5' -55.8 NC_005284.1 + 49845 0.69 0.501659
Target:  5'- aGCCCG--UACCGGGC-ACGGc-CGUCg -3'
miRNA:   3'- -UGGGUuaGUGGCCCGuUGCCaaGCGG- -5'
24814 5' -55.8 NC_005284.1 + 21838 0.69 0.501659
Target:  5'- uUCCAG-CGCCgccggcguGGGCGAUGGUgcCGCCg -3'
miRNA:   3'- uGGGUUaGUGG--------CCCGUUGCCAa-GCGG- -5'
24814 5' -55.8 NC_005284.1 + 21775 0.69 0.512007
Target:  5'- gGCaaagcAUCACCGGGCAGCaGcaUCGCCc -3'
miRNA:   3'- -UGggu--UAGUGGCCCGUUGcCa-AGCGG- -5'
24814 5' -55.8 NC_005284.1 + 52987 0.68 0.543548
Target:  5'- uGCCgaggCAAUCGCggUGGGCAuCGcGUUUGCCg -3'
miRNA:   3'- -UGG----GUUAGUG--GCCCGUuGC-CAAGCGG- -5'
24814 5' -55.8 NC_005284.1 + 38743 0.68 0.554206
Target:  5'- uGCCgaCGAUUACCGGcGCAauGCGGaucUCGUCg -3'
miRNA:   3'- -UGG--GUUAGUGGCC-CGU--UGCCa--AGCGG- -5'
24814 5' -55.8 NC_005284.1 + 31419 0.68 0.554206
Target:  5'- uGCgCCAGUUcgCGGGCGACGug-CGCCg -3'
miRNA:   3'- -UG-GGUUAGugGCCCGUUGCcaaGCGG- -5'
24814 5' -55.8 NC_005284.1 + 7912 0.68 0.564926
Target:  5'- gUUCAAUCGCCGGcGCAAgguccgguCGGUUgGCg -3'
miRNA:   3'- uGGGUUAGUGGCC-CGUU--------GCCAAgCGg -5'
24814 5' -55.8 NC_005284.1 + 4438 0.68 0.564926
Target:  5'- cACCCGG-CACac-GCAgaaagcACGGUUCGCCg -3'
miRNA:   3'- -UGGGUUaGUGgccCGU------UGCCAAGCGG- -5'
24814 5' -55.8 NC_005284.1 + 5899 0.68 0.564926
Target:  5'- cACCUucgcCGCCGGGCGuguccACGG--CGCCg -3'
miRNA:   3'- -UGGGuua-GUGGCCCGU-----UGCCaaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.