miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24814 5' -55.8 NC_005284.1 + 1117 0.72 0.368498
Target:  5'- cGCUgAuuggCAacCCGGGCGACGGcgcgUCGCCa -3'
miRNA:   3'- -UGGgUua--GU--GGCCCGUUGCCa---AGCGG- -5'
24814 5' -55.8 NC_005284.1 + 2123 0.71 0.416997
Target:  5'- cGCCCGAUCAagcaGGGCAacgacaacaagauugACGGUgcugUCGCa -3'
miRNA:   3'- -UGGGUUAGUgg--CCCGU---------------UGCCA----AGCGg -5'
24814 5' -55.8 NC_005284.1 + 4438 0.68 0.564926
Target:  5'- cACCCGG-CACac-GCAgaaagcACGGUUCGCCg -3'
miRNA:   3'- -UGGGUUaGUGgccCGU------UGCCAAGCGG- -5'
24814 5' -55.8 NC_005284.1 + 5899 0.68 0.564926
Target:  5'- cACCUucgcCGCCGGGCGuguccACGG--CGCCg -3'
miRNA:   3'- -UGGGuua-GUGGCCCGU-----UGCCaaGCGG- -5'
24814 5' -55.8 NC_005284.1 + 7912 0.68 0.564926
Target:  5'- gUUCAAUCGCCGGcGCAAgguccgguCGGUUgGCg -3'
miRNA:   3'- uGGGUUAGUGGCC-CGUU--------GCCAAgCGg -5'
24814 5' -55.8 NC_005284.1 + 8211 0.68 0.597374
Target:  5'- uGCCCAcugCGCCGccaugcucGGCAAcauCGGaUCGCCc -3'
miRNA:   3'- -UGGGUua-GUGGC--------CCGUU---GCCaAGCGG- -5'
24814 5' -55.8 NC_005284.1 + 11317 0.66 0.716633
Target:  5'- uGCUCGAcaaCAUCcGGCAGCGGaUCGCg -3'
miRNA:   3'- -UGGGUUa--GUGGcCCGUUGCCaAGCGg -5'
24814 5' -55.8 NC_005284.1 + 13573 0.67 0.662804
Target:  5'- -gCCAGUUgcagcaguACUGGGUAGCuGUUCGCa -3'
miRNA:   3'- ugGGUUAG--------UGGCCCGUUGcCAAGCGg -5'
24814 5' -55.8 NC_005284.1 + 15361 0.66 0.713448
Target:  5'- gGCUgCAAg-ACCGGGCGgaagaacgucggaaACGG-UCGCCa -3'
miRNA:   3'- -UGG-GUUagUGGCCCGU--------------UGCCaAGCGG- -5'
24814 5' -55.8 NC_005284.1 + 21235 0.66 0.695271
Target:  5'- gGCgCAcauAUCAgcUCGcGGCGGCGGUgagcuUCGCCu -3'
miRNA:   3'- -UGgGU---UAGU--GGC-CCGUUGCCA-----AGCGG- -5'
24814 5' -55.8 NC_005284.1 + 21633 0.67 0.662804
Target:  5'- cGCUCGA-CGCCGaGCAGCGuGcgaUCGCCg -3'
miRNA:   3'- -UGGGUUaGUGGCcCGUUGC-Ca--AGCGG- -5'
24814 5' -55.8 NC_005284.1 + 21775 0.69 0.512007
Target:  5'- gGCaaagcAUCACCGGGCAGCaGcaUCGCCc -3'
miRNA:   3'- -UGggu--UAGUGGCCCGUUGcCa-AGCGG- -5'
24814 5' -55.8 NC_005284.1 + 21838 0.69 0.501659
Target:  5'- uUCCAG-CGCCgccggcguGGGCGAUGGUgcCGCCg -3'
miRNA:   3'- uGGGUUaGUGG--------CCCGUUGCCAa-GCGG- -5'
24814 5' -55.8 NC_005284.1 + 23349 0.67 0.630082
Target:  5'- gGCCCGGcgCGCC--GCAGCGGcgcacgUCGCCc -3'
miRNA:   3'- -UGGGUUa-GUGGccCGUUGCCa-----AGCGG- -5'
24814 5' -55.8 NC_005284.1 + 23885 0.66 0.673668
Target:  5'- cGCCCGAugcaUCccgACUGGGCu-CGGU-CGCUg -3'
miRNA:   3'- -UGGGUU----AG---UGGCCCGuuGCCAaGCGG- -5'
24814 5' -55.8 NC_005284.1 + 24639 0.68 0.585434
Target:  5'- gACUCAGggGCCGGGCGaagGCGGUguuuuaugaguggUCGUg -3'
miRNA:   3'- -UGGGUUagUGGCCCGU---UGCCA-------------AGCGg -5'
24814 5' -55.8 NC_005284.1 + 27086 0.67 0.641
Target:  5'- aAUCCAucgCGCCGGaaucagGCAGCGGcgacccgcgCGCCa -3'
miRNA:   3'- -UGGGUua-GUGGCC------CGUUGCCaa-------GCGG- -5'
24814 5' -55.8 NC_005284.1 + 27652 0.66 0.716633
Target:  5'- aACCucgggCAAUCGCCGcuauacgggccGGCGuggcgcGCGGgUCGCCg -3'
miRNA:   3'- -UGG-----GUUAGUGGC-----------CCGU------UGCCaAGCGG- -5'
24814 5' -55.8 NC_005284.1 + 30905 0.7 0.440731
Target:  5'- aGCCCAGUCgggaugcAUCGGGCGggcgccgugGCGcuUUCGCCg -3'
miRNA:   3'- -UGGGUUAG-------UGGCCCGU---------UGCc-AAGCGG- -5'
24814 5' -55.8 NC_005284.1 + 31419 0.68 0.554206
Target:  5'- uGCgCCAGUUcgCGGGCGACGug-CGCCg -3'
miRNA:   3'- -UG-GGUUAGugGCCCGUUGCcaaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.