miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24816 5' -57.5 NC_005284.1 + 1817 0.66 0.646813
Target:  5'- gCCUCGGCaaCUCGaaGcAUCGGCaggauuGCGUCGa -3'
miRNA:   3'- -GGAGCCG--GAGCggC-UAGCUG------CGUAGU- -5'
24816 5' -57.5 NC_005284.1 + 18918 0.66 0.640382
Target:  5'- gCUUGGCacggagcugcgcgCGCCGAUCGACcuaAUCAc -3'
miRNA:   3'- gGAGCCGga-----------GCGGCUAGCUGcg-UAGU- -5'
24816 5' -57.5 NC_005284.1 + 7725 0.66 0.636094
Target:  5'- gCUCGuGCCgcCGCCGG-CGGCGUAa-- -3'
miRNA:   3'- gGAGC-CGGa-GCGGCUaGCUGCGUagu -5'
24816 5' -57.5 NC_005284.1 + 32797 0.66 0.625372
Target:  5'- gCgUCGGCCUgCGCgGGUUgcggGGCgGCGUCGg -3'
miRNA:   3'- -GgAGCCGGA-GCGgCUAG----CUG-CGUAGU- -5'
24816 5' -57.5 NC_005284.1 + 41609 0.66 0.625372
Target:  5'- ---aGGCCgCGCCGAgugCGAgcuccgacaCGCAUCGg -3'
miRNA:   3'- ggagCCGGaGCGGCUa--GCU---------GCGUAGU- -5'
24816 5' -57.5 NC_005284.1 + 45150 0.66 0.624299
Target:  5'- gCUCGGCCUgcgcugaagccucCGCCGcUUG-CGCGUUc -3'
miRNA:   3'- gGAGCCGGA-------------GCGGCuAGCuGCGUAGu -5'
24816 5' -57.5 NC_005284.1 + 32148 0.66 0.614655
Target:  5'- --gCGGCCgaUCGUaaCGAUCGAUGCAggUCGc -3'
miRNA:   3'- ggaGCCGG--AGCG--GCUAGCUGCGU--AGU- -5'
24816 5' -57.5 NC_005284.1 + 1167 0.66 0.603953
Target:  5'- gCUC-GUCUCGUCGAUCuGCGUAUUg -3'
miRNA:   3'- gGAGcCGGAGCGGCUAGcUGCGUAGu -5'
24816 5' -57.5 NC_005284.1 + 42995 0.66 0.603953
Target:  5'- gCUCcGCCUCgGCCGuGUUGAUGCGcUCGa -3'
miRNA:   3'- gGAGcCGGAG-CGGC-UAGCUGCGU-AGU- -5'
24816 5' -57.5 NC_005284.1 + 31141 0.66 0.603953
Target:  5'- -gUCGGCCUCuucCUGGUUGACGauCGUCGc -3'
miRNA:   3'- ggAGCCGGAGc--GGCUAGCUGC--GUAGU- -5'
24816 5' -57.5 NC_005284.1 + 46533 0.66 0.593274
Target:  5'- gCUCGGCCaacgucUUGCCGAgccgcagcgCGAgCGaCAUCAg -3'
miRNA:   3'- gGAGCCGG------AGCGGCUa--------GCU-GC-GUAGU- -5'
24816 5' -57.5 NC_005284.1 + 52047 0.67 0.582625
Target:  5'- uCCUCGGCCagcgUGCUGAcaguuccaUCGACGUu--- -3'
miRNA:   3'- -GGAGCCGGa---GCGGCU--------AGCUGCGuagu -5'
24816 5' -57.5 NC_005284.1 + 5624 0.67 0.562508
Target:  5'- uCCUCcaucGCCUCGCCGGgcccguccgccuugaCGACGCGc-- -3'
miRNA:   3'- -GGAGc---CGGAGCGGCUa--------------GCUGCGUagu -5'
24816 5' -57.5 NC_005284.1 + 21207 0.67 0.540498
Target:  5'- -aUCGGCUUCGCUGGUgGGUGCcgaaGUCAg -3'
miRNA:   3'- ggAGCCGGAGCGGCUAgCUGCG----UAGU- -5'
24816 5' -57.5 NC_005284.1 + 42191 0.68 0.530119
Target:  5'- aCUCGGUCUCGgcCCGGUCGGgauuuauaucCGCAg-- -3'
miRNA:   3'- gGAGCCGGAGC--GGCUAGCU----------GCGUagu -5'
24816 5' -57.5 NC_005284.1 + 15172 0.68 0.530119
Target:  5'- aCCUugCGGCCgUGCCGAcCGAccaguucgcgcuCGCGUCGg -3'
miRNA:   3'- -GGA--GCCGGaGCGGCUaGCU------------GCGUAGU- -5'
24816 5' -57.5 NC_005284.1 + 34587 0.68 0.530119
Target:  5'- uUCUCGGCgUCGCUGuaUGGCGaAUCAg -3'
miRNA:   3'- -GGAGCCGgAGCGGCuaGCUGCgUAGU- -5'
24816 5' -57.5 NC_005284.1 + 453 0.68 0.519812
Target:  5'- cCCggCGaGCCggcagCGCCuGGUCGGCGCAa-- -3'
miRNA:   3'- -GGa-GC-CGGa----GCGG-CUAGCUGCGUagu -5'
24816 5' -57.5 NC_005284.1 + 11768 0.68 0.509586
Target:  5'- gCC-CGaGUacaUCGCCGAgaUCGAgCGCAUCAa -3'
miRNA:   3'- -GGaGC-CGg--AGCGGCU--AGCU-GCGUAGU- -5'
24816 5' -57.5 NC_005284.1 + 48125 0.68 0.509586
Target:  5'- --cCGGCCgUCGCCaaaccCGGCGCGUCu -3'
miRNA:   3'- ggaGCCGG-AGCGGcua--GCUGCGUAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.