miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24816 5' -57.5 NC_005284.1 + 48125 0.68 0.509586
Target:  5'- --cCGGCCgUCGCCaaaccCGGCGCGUCu -3'
miRNA:   3'- ggaGCCGG-AGCGGcua--GCUGCGUAGu -5'
24816 5' -57.5 NC_005284.1 + 7340 0.68 0.499445
Target:  5'- uUCUCGGCC-CgGuuGAUCGGCGaGUCc -3'
miRNA:   3'- -GGAGCCGGaG-CggCUAGCUGCgUAGu -5'
24816 5' -57.5 NC_005284.1 + 7304 0.68 0.499445
Target:  5'- uCCUCGGUgUgGCCGAcgUCGA-GCAUg- -3'
miRNA:   3'- -GGAGCCGgAgCGGCU--AGCUgCGUAgu -5'
24816 5' -57.5 NC_005284.1 + 14187 0.68 0.489394
Target:  5'- uCCUCGGCUgcucgcgugaagUUGCCGugucuugCGGCuGCGUCGa -3'
miRNA:   3'- -GGAGCCGG------------AGCGGCua-----GCUG-CGUAGU- -5'
24816 5' -57.5 NC_005284.1 + 16152 0.68 0.479439
Target:  5'- gCCguggGGCacaUCGCUGAuggggcUCGGCGCGUCGa -3'
miRNA:   3'- -GGag--CCGg--AGCGGCU------AGCUGCGUAGU- -5'
24816 5' -57.5 NC_005284.1 + 49712 0.69 0.469584
Target:  5'- --aCGGaUCUUGUCGAUCGGCGUcgCAu -3'
miRNA:   3'- ggaGCC-GGAGCGGCUAGCUGCGuaGU- -5'
24816 5' -57.5 NC_005284.1 + 30385 0.69 0.469584
Target:  5'- gCUCGGCCcgcgugUGCUGGUCGGCaUGUCGa -3'
miRNA:   3'- gGAGCCGGa-----GCGGCUAGCUGcGUAGU- -5'
24816 5' -57.5 NC_005284.1 + 52773 0.69 0.440663
Target:  5'- -aUCGGCC-CGCCGuaAUCGcCGCcUCAa -3'
miRNA:   3'- ggAGCCGGaGCGGC--UAGCuGCGuAGU- -5'
24816 5' -57.5 NC_005284.1 + 47712 0.69 0.421954
Target:  5'- -gUCGGCaa-GCCGAUCGGCGUcggugaacGUCGg -3'
miRNA:   3'- ggAGCCGgagCGGCUAGCUGCG--------UAGU- -5'
24816 5' -57.5 NC_005284.1 + 33116 0.69 0.421954
Target:  5'- aCggCGGCCacCGCCGAcgCGGCgGCAUCGu -3'
miRNA:   3'- gGa-GCCGGa-GCGGCUa-GCUG-CGUAGU- -5'
24816 5' -57.5 NC_005284.1 + 47432 0.7 0.37735
Target:  5'- -aUCGGCCgCGUCGAgaucggUCGACGCAa-- -3'
miRNA:   3'- ggAGCCGGaGCGGCU------AGCUGCGUagu -5'
24816 5' -57.5 NC_005284.1 + 10949 0.71 0.352154
Target:  5'- --cCGGCCUCGUCGccggacgagCgGACGCAUCAa -3'
miRNA:   3'- ggaGCCGGAGCGGCua-------G-CUGCGUAGU- -5'
24816 5' -57.5 NC_005284.1 + 49605 0.71 0.335239
Target:  5'- uCUUCGGCgUCaaguggcguuugaGCUGAUCG-CGCGUCAg -3'
miRNA:   3'- -GGAGCCGgAG-------------CGGCUAGCuGCGUAGU- -5'
24816 5' -57.5 NC_005284.1 + 32277 0.71 0.328174
Target:  5'- aCUCGGUCUUGUgGAUCacGCGUAUCGa -3'
miRNA:   3'- gGAGCCGGAGCGgCUAGc-UGCGUAGU- -5'
24816 5' -57.5 NC_005284.1 + 36822 0.72 0.320454
Target:  5'- gCUUCGGCCUCGCCc-UUGGCG-AUCGc -3'
miRNA:   3'- -GGAGCCGGAGCGGcuAGCUGCgUAGU- -5'
24816 5' -57.5 NC_005284.1 + 43196 0.72 0.29094
Target:  5'- gCUCGGCCgcguagUCGCCGAgCucCGCGUCGa -3'
miRNA:   3'- gGAGCCGG------AGCGGCUaGcuGCGUAGU- -5'
24816 5' -57.5 NC_005284.1 + 21910 0.74 0.238378
Target:  5'- uUUCGGCgUCGCCGG-CGACG-AUCAg -3'
miRNA:   3'- gGAGCCGgAGCGGCUaGCUGCgUAGU- -5'
24816 5' -57.5 NC_005284.1 + 47984 1.1 0.000581
Target:  5'- cCCUCGGCCUCGCCGAUCGACGCAUCAa -3'
miRNA:   3'- -GGAGCCGGAGCGGCUAGCUGCGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.