miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24817 3' -55 NC_005284.1 + 31785 0.67 0.668035
Target:  5'- cGUCACcuCGGAGcGCGGCuCCGGCugGCu -3'
miRNA:   3'- -CAGUGcuGCUUUaUGCCGcGGCCG--CG- -5'
24817 3' -55 NC_005284.1 + 16320 0.68 0.657131
Target:  5'- cGUCAuCGGCGAA--AUGGuCGUCGGCu- -3'
miRNA:   3'- -CAGU-GCUGCUUuaUGCC-GCGGCCGcg -5'
24817 3' -55 NC_005284.1 + 47800 0.68 0.657131
Target:  5'- --gGCGACGG---GCGaGCGCuuggCGGCGCu -3'
miRNA:   3'- cagUGCUGCUuuaUGC-CGCG----GCCGCG- -5'
24817 3' -55 NC_005284.1 + 14597 0.68 0.656039
Target:  5'- cGUCgGCG-CGAAAguguucCGGCGCCGaacgcucGCGCg -3'
miRNA:   3'- -CAG-UGCuGCUUUau----GCCGCGGC-------CGCG- -5'
24817 3' -55 NC_005284.1 + 18018 0.68 0.656039
Target:  5'- gGUCgACGGCGAc--ACGGUcacgcucGCCGaGCGCu -3'
miRNA:   3'- -CAG-UGCUGCUuuaUGCCG-------CGGC-CGCG- -5'
24817 3' -55 NC_005284.1 + 42261 0.68 0.635265
Target:  5'- cGUUugGGCGAG---UGuGCGCCGGuCGUc -3'
miRNA:   3'- -CAGugCUGCUUuauGC-CGCGGCC-GCG- -5'
24817 3' -55 NC_005284.1 + 12381 0.68 0.635265
Target:  5'- ---uUGGCGGGAgcGCGGgaggaggggauuCGCCGGCGCg -3'
miRNA:   3'- caguGCUGCUUUa-UGCC------------GCGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 22088 0.68 0.635265
Target:  5'- -gCGCGACGGAAaa--GCGCUuGGCGCu -3'
miRNA:   3'- caGUGCUGCUUUaugcCGCGG-CCGCG- -5'
24817 3' -55 NC_005284.1 + 53761 0.68 0.624323
Target:  5'- aUUugGcUGAGAUACGGUuugcugauGCCGGCuGCu -3'
miRNA:   3'- cAGugCuGCUUUAUGCCG--------CGGCCG-CG- -5'
24817 3' -55 NC_005284.1 + 26346 0.68 0.624323
Target:  5'- -gCGCGGC-----ACGGUcaacGCCGGCGCg -3'
miRNA:   3'- caGUGCUGcuuuaUGCCG----CGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 48966 0.68 0.613388
Target:  5'- -gCAuCGACGAA--GCGGUGCU-GCGCg -3'
miRNA:   3'- caGU-GCUGCUUuaUGCCGCGGcCGCG- -5'
24817 3' -55 NC_005284.1 + 19936 0.68 0.61011
Target:  5'- -cCGCGACGGuAAUAgcagcaaucgacgcCGGUGCCGG-GCu -3'
miRNA:   3'- caGUGCUGCU-UUAU--------------GCCGCGGCCgCG- -5'
24817 3' -55 NC_005284.1 + 27850 0.68 0.602469
Target:  5'- aGUCGCcaGACGAc--GCGcCGcCCGGCGCa -3'
miRNA:   3'- -CAGUG--CUGCUuuaUGCcGC-GGCCGCG- -5'
24817 3' -55 NC_005284.1 + 8111 0.68 0.602469
Target:  5'- gGUCGCGGCGgcGUuCGGC-CCcGUGCa -3'
miRNA:   3'- -CAGUGCUGCuuUAuGCCGcGGcCGCG- -5'
24817 3' -55 NC_005284.1 + 18176 0.69 0.595929
Target:  5'- -aCGCGACgcaguacgagccgggGAAGUacGCGGCGaucgacgaCGGCGCa -3'
miRNA:   3'- caGUGCUG---------------CUUUA--UGCCGCg-------GCCGCG- -5'
24817 3' -55 NC_005284.1 + 16164 0.69 0.591575
Target:  5'- aUCGCuGAUGggGcuCGGCGCgucgaUGGCGCu -3'
miRNA:   3'- cAGUG-CUGCuuUauGCCGCG-----GCCGCG- -5'
24817 3' -55 NC_005284.1 + 55 0.69 0.591575
Target:  5'- aUCGCGAC--AGUGCcGgGCCGGgGCa -3'
miRNA:   3'- cAGUGCUGcuUUAUGcCgCGGCCgCG- -5'
24817 3' -55 NC_005284.1 + 22238 0.69 0.591575
Target:  5'- uGUUACGuCGAGGUguucgcggGCGGgGC-GGCGCu -3'
miRNA:   3'- -CAGUGCuGCUUUA--------UGCCgCGgCCGCG- -5'
24817 3' -55 NC_005284.1 + 16676 0.69 0.591575
Target:  5'- cGUCGa-GCGuGAGgcCGGCGUCGGCGUg -3'
miRNA:   3'- -CAGUgcUGC-UUUauGCCGCGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 32525 0.69 0.591575
Target:  5'- gGUCGC-AUGAAGUACaGCGCCGcccCGCc -3'
miRNA:   3'- -CAGUGcUGCUUUAUGcCGCGGCc--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.