miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24817 3' -55 NC_005284.1 + 32545 0.66 0.732379
Target:  5'- cUCGCGGCGG---GCGGgGC-GGUGUa -3'
miRNA:   3'- cAGUGCUGCUuuaUGCCgCGgCCGCG- -5'
24817 3' -55 NC_005284.1 + 17695 0.66 0.732379
Target:  5'- -gCGCGACGcccuGAAUcu--CGCCGGCGCg -3'
miRNA:   3'- caGUGCUGC----UUUAugccGCGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 21404 0.66 0.732379
Target:  5'- gGUgAUGGCGAGccgucgGCaGCGCCGGC-Cg -3'
miRNA:   3'- -CAgUGCUGCUUua----UGcCGCGGCCGcG- -5'
24817 3' -55 NC_005284.1 + 12633 0.66 0.721838
Target:  5'- -gCACGGCGGcGAUACGaCGCUGcguguGCGCa -3'
miRNA:   3'- caGUGCUGCU-UUAUGCcGCGGC-----CGCG- -5'
24817 3' -55 NC_005284.1 + 47061 0.67 0.711209
Target:  5'- aGUUACGcCGccg-GCGGCGgcacgagcuUCGGCGCa -3'
miRNA:   3'- -CAGUGCuGCuuuaUGCCGC---------GGCCGCG- -5'
24817 3' -55 NC_005284.1 + 44998 0.67 0.711209
Target:  5'- --gGCGACGuug-GCGcGCGCCGuuGCg -3'
miRNA:   3'- cagUGCUGCuuuaUGC-CGCGGCcgCG- -5'
24817 3' -55 NC_005284.1 + 31601 0.67 0.711209
Target:  5'- cUCACGAuuugcucccuUGGGugcggGCGGCGUCgagGGCGCa -3'
miRNA:   3'- cAGUGCU----------GCUUua---UGCCGCGG---CCGCG- -5'
24817 3' -55 NC_005284.1 + 11980 0.67 0.710142
Target:  5'- cUCACGAUGGcc-GCuGCuaucacguagaauGCCGGCGCg -3'
miRNA:   3'- cAGUGCUGCUuuaUGcCG-------------CGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 40606 0.67 0.704794
Target:  5'- uUCACG-CGAgcagccgaggaauugAAUGUGGCGCaaGGCGCg -3'
miRNA:   3'- cAGUGCuGCU---------------UUAUGCCGCGg-CCGCG- -5'
24817 3' -55 NC_005284.1 + 46062 0.67 0.700503
Target:  5'- uUCGCGGauCGAAcUGCGcgccGCGUCGaGCGCg -3'
miRNA:   3'- cAGUGCU--GCUUuAUGC----CGCGGC-CGCG- -5'
24817 3' -55 NC_005284.1 + 45638 0.67 0.700503
Target:  5'- uUCGCGGgGcAGgcugGCGGCucGUCGGUGCg -3'
miRNA:   3'- cAGUGCUgCuUUa---UGCCG--CGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 8615 0.67 0.697278
Target:  5'- cUCGuCGACGGccggcucguauuucAAUGCGGUgcgcgacgGCgGGCGCa -3'
miRNA:   3'- cAGU-GCUGCU--------------UUAUGCCG--------CGgCCGCG- -5'
24817 3' -55 NC_005284.1 + 13721 0.67 0.697278
Target:  5'- aGUCcUGGgGAGGcacGCGGCGCCccgcgagaaacgucGGCGCg -3'
miRNA:   3'- -CAGuGCUgCUUUa--UGCCGCGG--------------CCGCG- -5'
24817 3' -55 NC_005284.1 + 45886 0.67 0.689731
Target:  5'- uGUCGCGuCGA---GCGGuUGCCGuggucGCGCg -3'
miRNA:   3'- -CAGUGCuGCUuuaUGCC-GCGGC-----CGCG- -5'
24817 3' -55 NC_005284.1 + 13702 0.67 0.689731
Target:  5'- cGUCGgGACGAAGaagACGuuuaCGCaGGCGCa -3'
miRNA:   3'- -CAGUgCUGCUUUa--UGCc---GCGgCCGCG- -5'
24817 3' -55 NC_005284.1 + 35846 0.67 0.689731
Target:  5'- -cCAuCGGCGggGUGauuaGGuCGaUCGGCGCg -3'
miRNA:   3'- caGU-GCUGCuuUAUg---CC-GC-GGCCGCG- -5'
24817 3' -55 NC_005284.1 + 6693 0.67 0.689731
Target:  5'- aGUCAagcgauaGGCGcucGGAUGacCGG-GCCGGCGCg -3'
miRNA:   3'- -CAGUg------CUGC---UUUAU--GCCgCGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 48339 0.67 0.689731
Target:  5'- --gGCGGCGAGAUGauucucGCGCUGGCa- -3'
miRNA:   3'- cagUGCUGCUUUAUgc----CGCGGCCGcg -5'
24817 3' -55 NC_005284.1 + 12194 0.67 0.668035
Target:  5'- cUCGCGACGG---GCGGgGC-GGUGUg -3'
miRNA:   3'- cAGUGCUGCUuuaUGCCgCGgCCGCG- -5'
24817 3' -55 NC_005284.1 + 31785 0.67 0.668035
Target:  5'- cGUCACcuCGGAGcGCGGCuCCGGCugGCu -3'
miRNA:   3'- -CAGUGcuGCUUUaUGCCGcGGCCG--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.