miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24817 3' -55 NC_005284.1 + 33147 0.72 0.390681
Target:  5'- -gCGCGGCGAucgcacgcugcuCGGCGUCGaGCGCg -3'
miRNA:   3'- caGUGCUGCUuuau--------GCCGCGGC-CGCG- -5'
24817 3' -55 NC_005284.1 + 48857 0.72 0.398817
Target:  5'- -cCGCGagGCGAAAgcgGCGGagaaGUCGGCGCc -3'
miRNA:   3'- caGUGC--UGCUUUa--UGCCg---CGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 43846 0.72 0.40706
Target:  5'- cGUCcgGCGACGAGgccggccAUGCGG-GCCuGCGCa -3'
miRNA:   3'- -CAG--UGCUGCUU-------UAUGCCgCGGcCGCG- -5'
24817 3' -55 NC_005284.1 + 46657 0.72 0.407982
Target:  5'- uUCACGACGA--UGCGGUuguGCaCGGgGCc -3'
miRNA:   3'- cAGUGCUGCUuuAUGCCG---CG-GCCgCG- -5'
24817 3' -55 NC_005284.1 + 23861 0.72 0.417278
Target:  5'- --gGCGGCGAAA-GCGGC-CaCGGCGCc -3'
miRNA:   3'- cagUGCUGCUUUaUGCCGcG-GCCGCG- -5'
24817 3' -55 NC_005284.1 + 9357 0.72 0.417278
Target:  5'- aUCGCGACGccgcGAAUAuCGuCGCCGGcCGCg -3'
miRNA:   3'- cAGUGCUGC----UUUAU-GCcGCGGCC-GCG- -5'
24817 3' -55 NC_005284.1 + 27091 0.72 0.426703
Target:  5'- aUCGCGcCGGAAUcaggcaGCGGCGaCCcGCGCg -3'
miRNA:   3'- cAGUGCuGCUUUA------UGCCGC-GGcCGCG- -5'
24817 3' -55 NC_005284.1 + 21815 0.71 0.436252
Target:  5'- gGUgGCGACGgcGUGCccGGCgcuuccagcgccGCCGGCGUg -3'
miRNA:   3'- -CAgUGCUGCuuUAUG--CCG------------CGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 49857 0.71 0.445924
Target:  5'- -gCACGGCcgucGAuAUACGauugcaGUGCCGGCGCa -3'
miRNA:   3'- caGUGCUG----CUuUAUGC------CGCGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 16032 0.71 0.445924
Target:  5'- -gCGCGACGAGAUcCGcauuGCGCCGGUa- -3'
miRNA:   3'- caGUGCUGCUUUAuGC----CGCGGCCGcg -5'
24817 3' -55 NC_005284.1 + 9926 0.71 0.445924
Target:  5'- cUCGCGcagcaGCGgcGUACGGCGCUugaGGCGg -3'
miRNA:   3'- cAGUGC-----UGCuuUAUGCCGCGG---CCGCg -5'
24817 3' -55 NC_005284.1 + 10659 0.71 0.465619
Target:  5'- -gCGCGAgGAAcugGUGCGcGcCGCgGGCGCg -3'
miRNA:   3'- caGUGCUgCUU---UAUGC-C-GCGgCCGCG- -5'
24817 3' -55 NC_005284.1 + 31427 0.71 0.475634
Target:  5'- uUCGCgGGCGAcGUGCGcCGCugCGGCGCg -3'
miRNA:   3'- cAGUG-CUGCUuUAUGCcGCG--GCCGCG- -5'
24817 3' -55 NC_005284.1 + 26739 0.7 0.492901
Target:  5'- -cUACGGCGccuucucccuucccAAucACGGUGCUGGCGCu -3'
miRNA:   3'- caGUGCUGC--------------UUuaUGCCGCGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 15144 0.7 0.495978
Target:  5'- --aGCGGCGAGAuaUACGuGCGCUGcCGCa -3'
miRNA:   3'- cagUGCUGCUUU--AUGC-CGCGGCcGCG- -5'
24817 3' -55 NC_005284.1 + 27642 0.7 0.500094
Target:  5'- -gCGCGACGAcaaccucgggcaaucGccgcuAUACGG-GCCGGCGUg -3'
miRNA:   3'- caGUGCUGCU---------------U-----UAUGCCgCGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 36512 0.7 0.506297
Target:  5'- uGUCGagaGGCGGAcguucgACGGCGgCGGCuGCa -3'
miRNA:   3'- -CAGUg--CUGCUUua----UGCCGCgGCCG-CG- -5'
24817 3' -55 NC_005284.1 + 38776 0.7 0.506297
Target:  5'- uGUC-CGGCGAAGUaguugcgaucAUGGCGCUcgauGGCGUc -3'
miRNA:   3'- -CAGuGCUGCUUUA----------UGCCGCGG----CCGCG- -5'
24817 3' -55 NC_005284.1 + 23343 0.7 0.506297
Target:  5'- gGUgAUGGCGGAAagcgGCGGCGuuGGCc- -3'
miRNA:   3'- -CAgUGCUGCUUUa---UGCCGCggCCGcg -5'
24817 3' -55 NC_005284.1 + 22865 0.7 0.506297
Target:  5'- --gGCGGCGGGA-AgGGCGUCGaGCGCc -3'
miRNA:   3'- cagUGCUGCUUUaUgCCGCGGC-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.