miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24817 3' -55 NC_005284.1 + 10631 0.73 0.355019
Target:  5'- uGUCgGCGACGAGcgGCGGCGaa-GCGCu -3'
miRNA:   3'- -CAG-UGCUGCUUuaUGCCGCggcCGCG- -5'
24817 3' -55 NC_005284.1 + 10659 0.71 0.465619
Target:  5'- -gCGCGAgGAAcugGUGCGcGcCGCgGGCGCg -3'
miRNA:   3'- caGUGCUgCUU---UAUGC-C-GCGgCCGCG- -5'
24817 3' -55 NC_005284.1 + 11272 0.69 0.585054
Target:  5'- -gCGCGGCGAAGggggGCGGUGUucauucgcuggaaagCGaGCGCa -3'
miRNA:   3'- caGUGCUGCUUUa---UGCCGCG---------------GC-CGCG- -5'
24817 3' -55 NC_005284.1 + 11980 0.67 0.710142
Target:  5'- cUCACGAUGGcc-GCuGCuaucacguagaauGCCGGCGCg -3'
miRNA:   3'- cAGUGCUGCUuuaUGcCG-------------CGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 12194 0.67 0.668035
Target:  5'- cUCGCGACGG---GCGGgGC-GGUGUg -3'
miRNA:   3'- cAGUGCUGCUuuaUGCCgCGgCCGCG- -5'
24817 3' -55 NC_005284.1 + 12381 0.68 0.635265
Target:  5'- ---uUGGCGGGAgcGCGGgaggaggggauuCGCCGGCGCg -3'
miRNA:   3'- caguGCUGCUUUa-UGCC------------GCGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 12633 0.66 0.721838
Target:  5'- -gCACGGCGGcGAUACGaCGCUGcguguGCGCa -3'
miRNA:   3'- caGUGCUGCU-UUAUGCcGCGGC-----CGCG- -5'
24817 3' -55 NC_005284.1 + 13702 0.67 0.689731
Target:  5'- cGUCGgGACGAAGaagACGuuuaCGCaGGCGCa -3'
miRNA:   3'- -CAGUgCUGCUUUa--UGCc---GCGgCCGCG- -5'
24817 3' -55 NC_005284.1 + 13721 0.67 0.697278
Target:  5'- aGUCcUGGgGAGGcacGCGGCGCCccgcgagaaacgucGGCGCg -3'
miRNA:   3'- -CAGuGCUgCUUUa--UGCCGCGG--------------CCGCG- -5'
24817 3' -55 NC_005284.1 + 14597 0.68 0.656039
Target:  5'- cGUCgGCG-CGAAAguguucCGGCGCCGaacgcucGCGCg -3'
miRNA:   3'- -CAG-UGCuGCUUUau----GCCGCGGC-------CGCG- -5'
24817 3' -55 NC_005284.1 + 14836 0.75 0.257623
Target:  5'- aUCGCGGCcccGAGUGCGGCuauaCCGGUGCg -3'
miRNA:   3'- cAGUGCUGc--UUUAUGCCGc---GGCCGCG- -5'
24817 3' -55 NC_005284.1 + 15144 0.7 0.495978
Target:  5'- --aGCGGCGAGAuaUACGuGCGCUGcCGCa -3'
miRNA:   3'- cagUGCUGCUUU--AUGC-CGCGGCcGCG- -5'
24817 3' -55 NC_005284.1 + 16032 0.71 0.445924
Target:  5'- -gCGCGACGAGAUcCGcauuGCGCCGGUa- -3'
miRNA:   3'- caGUGCUGCUUUAuGC----CGCGGCCGcg -5'
24817 3' -55 NC_005284.1 + 16164 0.69 0.591575
Target:  5'- aUCGCuGAUGggGcuCGGCGCgucgaUGGCGCu -3'
miRNA:   3'- cAGUG-CUGCuuUauGCCGCG-----GCCGCG- -5'
24817 3' -55 NC_005284.1 + 16320 0.68 0.657131
Target:  5'- cGUCAuCGGCGAA--AUGGuCGUCGGCu- -3'
miRNA:   3'- -CAGU-GCUGCUUuaUGCC-GCGGCCGcg -5'
24817 3' -55 NC_005284.1 + 16676 0.69 0.591575
Target:  5'- cGUCGa-GCGuGAGgcCGGCGUCGGCGUg -3'
miRNA:   3'- -CAGUgcUGC-UUUauGCCGCGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 16856 0.69 0.569897
Target:  5'- gGUCgACGGCGGGucGUAUGcGCaggugcugGCCGGUGCg -3'
miRNA:   3'- -CAG-UGCUGCUU--UAUGC-CG--------CGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 17428 0.67 0.668035
Target:  5'- cGUCaACGuCGAAGUGaaGGgGCCcgGGCGCu -3'
miRNA:   3'- -CAG-UGCuGCUUUAUg-CCgCGG--CCGCG- -5'
24817 3' -55 NC_005284.1 + 17695 0.66 0.732379
Target:  5'- -gCGCGACGcccuGAAUcu--CGCCGGCGCg -3'
miRNA:   3'- caGUGCUGC----UUUAugccGCGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 17716 0.73 0.363502
Target:  5'- gGUCACGGCGuucgGCugcacgucgcaGGCGCaGGCGCa -3'
miRNA:   3'- -CAGUGCUGCuuuaUG-----------CCGCGgCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.