miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24817 3' -55 NC_005284.1 + 55 0.69 0.591575
Target:  5'- aUCGCGAC--AGUGCcGgGCCGGgGCa -3'
miRNA:   3'- cAGUGCUGcuUUAUGcCgCGGCCgCG- -5'
24817 3' -55 NC_005284.1 + 390 0.66 0.741782
Target:  5'- --uGCGACcguugugaaGGAAgcgGCGGCGCaaauggcgaguuuCGGCGCa -3'
miRNA:   3'- cagUGCUG---------CUUUa--UGCCGCG-------------GCCGCG- -5'
24817 3' -55 NC_005284.1 + 943 0.74 0.330415
Target:  5'- --gACGACGAGuu-CGGUgccgagguguacGCCGGCGCg -3'
miRNA:   3'- cagUGCUGCUUuauGCCG------------CGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 4630 0.66 0.763362
Target:  5'- --uGCGACGGucggcaGCGGCGUgagCGGCaGCa -3'
miRNA:   3'- cagUGCUGCUuua---UGCCGCG---GCCG-CG- -5'
24817 3' -55 NC_005284.1 + 6337 0.66 0.757251
Target:  5'- aUC-CGGCGAAGcUgguacugcacugcacGCGGCGaUUGGCGCg -3'
miRNA:   3'- cAGuGCUGCUUU-A---------------UGCCGC-GGCCGCG- -5'
24817 3' -55 NC_005284.1 + 6693 0.67 0.689731
Target:  5'- aGUCAagcgauaGGCGcucGGAUGacCGG-GCCGGCGCg -3'
miRNA:   3'- -CAGUg------CUGC---UUUAU--GCCgCGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 6945 0.77 0.214867
Target:  5'- cGUCGCacCGGAGaa-GGCGCCGGCGCc -3'
miRNA:   3'- -CAGUGcuGCUUUaugCCGCGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 7966 0.65 0.773438
Target:  5'- --gACGACGAAAcgGCGGUuCCGagaaguucGCGCg -3'
miRNA:   3'- cagUGCUGCUUUa-UGCCGcGGC--------CGCG- -5'
24817 3' -55 NC_005284.1 + 8111 0.68 0.602469
Target:  5'- gGUCGCGGCGgcGUuCGGC-CCcGUGCa -3'
miRNA:   3'- -CAGUGCUGCuuUAuGCCGcGGcCGCG- -5'
24817 3' -55 NC_005284.1 + 8368 0.74 0.322497
Target:  5'- --uGCGGCGAuGAUcGCGGCGgCGGCGUu -3'
miRNA:   3'- cagUGCUGCU-UUA-UGCCGCgGCCGCG- -5'
24817 3' -55 NC_005284.1 + 8570 0.69 0.559129
Target:  5'- cGUUACGGCGAauacgaccgAAUACGacCGCCGcauGCGCg -3'
miRNA:   3'- -CAGUGCUGCU---------UUAUGCc-GCGGC---CGCG- -5'
24817 3' -55 NC_005284.1 + 8615 0.67 0.697278
Target:  5'- cUCGuCGACGGccggcucguauuucAAUGCGGUgcgcgacgGCgGGCGCa -3'
miRNA:   3'- cAGU-GCUGCU--------------UUAUGCCG--------CGgCCGCG- -5'
24817 3' -55 NC_005284.1 + 9357 0.72 0.417278
Target:  5'- aUCGCGACGccgcGAAUAuCGuCGCCGGcCGCg -3'
miRNA:   3'- cAGUGCUGC----UUUAU-GCcGCGGCC-GCG- -5'
24817 3' -55 NC_005284.1 + 9484 0.78 0.178343
Target:  5'- aGUCGCGGCGAcgcagGCGGCgacagcguggGUCGGCGCc -3'
miRNA:   3'- -CAGUGCUGCUuua--UGCCG----------CGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 9535 0.66 0.753152
Target:  5'- cGUCGaggaGACGAucaagcaacacGAgGCGGCGCaGGCaGCg -3'
miRNA:   3'- -CAGUg---CUGCU-----------UUaUGCCGCGgCCG-CG- -5'
24817 3' -55 NC_005284.1 + 9760 0.69 0.552695
Target:  5'- --gGCGGuCGAGGcgACGGCGCaagcucacgucgcaaCGGCGCg -3'
miRNA:   3'- cagUGCU-GCUUUa-UGCCGCG---------------GCCGCG- -5'
24817 3' -55 NC_005284.1 + 9848 0.69 0.548419
Target:  5'- -gCACGGCGGgcGAUACaccgaGGCGC-GGUGCg -3'
miRNA:   3'- caGUGCUGCU--UUAUG-----CCGCGgCCGCG- -5'
24817 3' -55 NC_005284.1 + 9926 0.71 0.445924
Target:  5'- cUCGCGcagcaGCGgcGUACGGCGCUugaGGCGg -3'
miRNA:   3'- cAGUGC-----UGCuuUAUGCCGCGG---CCGCg -5'
24817 3' -55 NC_005284.1 + 10116 0.74 0.30709
Target:  5'- --gGCGAcCGAAAgcGCGGCGaCGGCGCa -3'
miRNA:   3'- cagUGCU-GCUUUa-UGCCGCgGCCGCG- -5'
24817 3' -55 NC_005284.1 + 10450 0.65 0.773438
Target:  5'- uUgGCGACGcgg-GCGGCGCaaagugucaUGGUGCc -3'
miRNA:   3'- cAgUGCUGCuuuaUGCCGCG---------GCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.