miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24817 3' -55 NC_005284.1 + 54675 0.75 0.271055
Target:  5'- -aCGCGGCGAAG-ACGGCGCgCGaGCGg -3'
miRNA:   3'- caGUGCUGCUUUaUGCCGCG-GC-CGCg -5'
24817 3' -55 NC_005284.1 + 53761 0.68 0.624323
Target:  5'- aUUugGcUGAGAUACGGUuugcugauGCCGGCuGCu -3'
miRNA:   3'- cAGugCuGCUUUAUGCCG--------CGGCCG-CG- -5'
24817 3' -55 NC_005284.1 + 53684 0.66 0.753152
Target:  5'- aGUCGuCGACGGgc-ACGGCaagugcGCUGGCGa -3'
miRNA:   3'- -CAGU-GCUGCUuuaUGCCG------CGGCCGCg -5'
24817 3' -55 NC_005284.1 + 53553 0.78 0.173599
Target:  5'- cGUgAUGAUGAAcaugaGCGGCuGCCGGCGCg -3'
miRNA:   3'- -CAgUGCUGCUUua---UGCCG-CGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 52919 0.73 0.372125
Target:  5'- aUCACGugGAAcgGCagGGCGCCGaaGCc -3'
miRNA:   3'- cAGUGCugCUUuaUG--CCGCGGCcgCG- -5'
24817 3' -55 NC_005284.1 + 49932 0.74 0.322497
Target:  5'- cGUCgAUGACGAcuGAUACGGUGaaggGGCGCa -3'
miRNA:   3'- -CAG-UGCUGCU--UUAUGCCGCgg--CCGCG- -5'
24817 3' -55 NC_005284.1 + 49857 0.71 0.445924
Target:  5'- -gCACGGCcgucGAuAUACGauugcaGUGCCGGCGCa -3'
miRNA:   3'- caGUGCUG----CUuUAUGC------CGCGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 48966 0.68 0.613388
Target:  5'- -gCAuCGACGAA--GCGGUGCU-GCGCg -3'
miRNA:   3'- caGU-GCUGCUUuaUGCCGCGGcCGCG- -5'
24817 3' -55 NC_005284.1 + 48857 0.72 0.398817
Target:  5'- -cCGCGagGCGAAAgcgGCGGagaaGUCGGCGCc -3'
miRNA:   3'- caGUGC--UGCUUUa--UGCCg---CGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 48823 0.76 0.232396
Target:  5'- uUCGCGACGAucgGAU-CGGCGCCagccguGGCGUc -3'
miRNA:   3'- cAGUGCUGCU---UUAuGCCGCGG------CCGCG- -5'
24817 3' -55 NC_005284.1 + 48339 0.67 0.689731
Target:  5'- --gGCGGCGAGAUGauucucGCGCUGGCa- -3'
miRNA:   3'- cagUGCUGCUUUAUgc----CGCGGCCGcg -5'
24817 3' -55 NC_005284.1 + 47945 0.65 0.773438
Target:  5'- -aCACGAuCGAuc-GCGcGCGCCaacucGGUGCg -3'
miRNA:   3'- caGUGCU-GCUuuaUGC-CGCGG-----CCGCG- -5'
24817 3' -55 NC_005284.1 + 47826 1.11 0.000875
Target:  5'- cGUCACGACGAAAUACGGCGCCGGCGCc -3'
miRNA:   3'- -CAGUGCUGCUUUAUGCCGCGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 47800 0.68 0.657131
Target:  5'- --gGCGACGG---GCGaGCGCuuggCGGCGCu -3'
miRNA:   3'- cagUGCUGCUuuaUGC-CGCG----GCCGCG- -5'
24817 3' -55 NC_005284.1 + 47061 0.67 0.711209
Target:  5'- aGUUACGcCGccg-GCGGCGgcacgagcuUCGGCGCa -3'
miRNA:   3'- -CAGUGCuGCuuuaUGCCGC---------GGCCGCG- -5'
24817 3' -55 NC_005284.1 + 46657 0.72 0.407982
Target:  5'- uUCACGACGA--UGCGGUuguGCaCGGgGCc -3'
miRNA:   3'- cAGUGCUGCUuuAUGCCG---CG-GCCgCG- -5'
24817 3' -55 NC_005284.1 + 46062 0.67 0.700503
Target:  5'- uUCGCGGauCGAAcUGCGcgccGCGUCGaGCGCg -3'
miRNA:   3'- cAGUGCU--GCUUuAUGC----CGCGGC-CGCG- -5'
24817 3' -55 NC_005284.1 + 45886 0.67 0.689731
Target:  5'- uGUCGCGuCGA---GCGGuUGCCGuggucGCGCg -3'
miRNA:   3'- -CAGUGCuGCUuuaUGCC-GCGGC-----CGCG- -5'
24817 3' -55 NC_005284.1 + 45638 0.67 0.700503
Target:  5'- uUCGCGGgGcAGgcugGCGGCucGUCGGUGCg -3'
miRNA:   3'- cAGUGCUgCuUUa---UGCCG--CGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 44998 0.67 0.711209
Target:  5'- --gGCGACGuug-GCGcGCGCCGuuGCg -3'
miRNA:   3'- cagUGCUGCuuuaUGC-CGCGGCcgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.