miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24817 3' -55 NC_005284.1 + 47826 1.11 0.000875
Target:  5'- cGUCACGACGAAAUACGGCGCCGGCGCc -3'
miRNA:   3'- -CAGUGCUGCUUUAUGCCGCGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 29872 0.85 0.061464
Target:  5'- cUCGCGAUGGu---CGGCGCCGGCGUg -3'
miRNA:   3'- cAGUGCUGCUuuauGCCGCGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 21003 0.84 0.068758
Target:  5'- -gCGCGAucgacuaCGAAGU-CGGCGCCGGCGCa -3'
miRNA:   3'- caGUGCU-------GCUUUAuGCCGCGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 23331 0.79 0.143443
Target:  5'- -gCACGGCGGucAAUugGGgGcCCGGCGCg -3'
miRNA:   3'- caGUGCUGCU--UUAugCCgC-GGCCGCG- -5'
24817 3' -55 NC_005284.1 + 53553 0.78 0.173599
Target:  5'- cGUgAUGAUGAAcaugaGCGGCuGCCGGCGCg -3'
miRNA:   3'- -CAgUGCUGCUUua---UGCCG-CGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 9484 0.78 0.178343
Target:  5'- aGUCGCGGCGAcgcagGCGGCgacagcguggGUCGGCGCc -3'
miRNA:   3'- -CAGUGCUGCUuua--UGCCG----------CGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 6945 0.77 0.214867
Target:  5'- cGUCGCacCGGAGaa-GGCGCCGGCGCc -3'
miRNA:   3'- -CAGUGcuGCUUUaugCCGCGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 48823 0.76 0.232396
Target:  5'- uUCGCGACGAucgGAU-CGGCGCCagccguGGCGUc -3'
miRNA:   3'- cAGUGCUGCU---UUAuGCCGCGG------CCGCG- -5'
24817 3' -55 NC_005284.1 + 14836 0.75 0.257623
Target:  5'- aUCGCGGCcccGAGUGCGGCuauaCCGGUGCg -3'
miRNA:   3'- cAGUGCUGc--UUUAUGCCGc---GGCCGCG- -5'
24817 3' -55 NC_005284.1 + 54675 0.75 0.271055
Target:  5'- -aCGCGGCGAAG-ACGGCGCgCGaGCGg -3'
miRNA:   3'- caGUGCUGCUUUaUGCCGCG-GC-CGCg -5'
24817 3' -55 NC_005284.1 + 33757 0.75 0.285046
Target:  5'- uGUCGCGAcauucuguCGAAGU---GCGCCGGCGCc -3'
miRNA:   3'- -CAGUGCU--------GCUUUAugcCGCGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 38830 0.74 0.30709
Target:  5'- -aCACGGCGAAcGUGaggcCGGCGUCGcGCGCc -3'
miRNA:   3'- caGUGCUGCUU-UAU----GCCGCGGC-CGCG- -5'
24817 3' -55 NC_005284.1 + 10116 0.74 0.30709
Target:  5'- --gGCGAcCGAAAgcGCGGCGaCGGCGCa -3'
miRNA:   3'- cagUGCU-GCUUUa-UGCCGCgGCCGCG- -5'
24817 3' -55 NC_005284.1 + 22531 0.74 0.314722
Target:  5'- --gGCGACGAc-UACGGUGCCGG-GCc -3'
miRNA:   3'- cagUGCUGCUuuAUGCCGCGGCCgCG- -5'
24817 3' -55 NC_005284.1 + 8368 0.74 0.322497
Target:  5'- --uGCGGCGAuGAUcGCGGCGgCGGCGUu -3'
miRNA:   3'- cagUGCUGCU-UUA-UGCCGCgGCCGCG- -5'
24817 3' -55 NC_005284.1 + 49932 0.74 0.322497
Target:  5'- cGUCgAUGACGAcuGAUACGGUGaaggGGCGCa -3'
miRNA:   3'- -CAG-UGCUGCU--UUAUGCCGCgg--CCGCG- -5'
24817 3' -55 NC_005284.1 + 943 0.74 0.330415
Target:  5'- --gACGACGAGuu-CGGUgccgagguguacGCCGGCGCg -3'
miRNA:   3'- cagUGCUGCUUuauGCCG------------CGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 10631 0.73 0.355019
Target:  5'- uGUCgGCGACGAGcgGCGGCGaa-GCGCu -3'
miRNA:   3'- -CAG-UGCUGCUUuaUGCCGCggcCGCG- -5'
24817 3' -55 NC_005284.1 + 17716 0.73 0.363502
Target:  5'- gGUCACGGCGuucgGCugcacgucgcaGGCGCaGGCGCa -3'
miRNA:   3'- -CAGUGCUGCuuuaUG-----------CCGCGgCCGCG- -5'
24817 3' -55 NC_005284.1 + 52919 0.73 0.372125
Target:  5'- aUCACGugGAAcgGCagGGCGCCGaaGCc -3'
miRNA:   3'- cAGUGCugCUUuaUG--CCGCGGCcgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.