miRNA display CGI


Results 21 - 40 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24819 3' -56.1 NC_005284.1 + 52999 0.68 0.515428
Target:  5'- cGCGGugGGCauCGCGUUUGCCgcUGCAc -3'
miRNA:   3'- uUGCUugUCGgcGCGUAAGCGG--ACGU- -5'
24819 3' -56.1 NC_005284.1 + 42954 0.68 0.514363
Target:  5'- cGCGAGCcgcugcucgagauAGCCGCGCucgcgcgCGaCCUGCu -3'
miRNA:   3'- uUGCUUG-------------UCGGCGCGuaa----GC-GGACGu -5'
24819 3' -56.1 NC_005284.1 + 5814 0.68 0.514363
Target:  5'- -cCGucCAGCCGCGCAgcaccgcUUCGUCgaUGCAg -3'
miRNA:   3'- uuGCuuGUCGGCGCGU-------AAGCGG--ACGU- -5'
24819 3' -56.1 NC_005284.1 + 50614 0.68 0.50482
Target:  5'- -uCGAGCAGCCGauucaCGuCGUUCGCCaUGUc -3'
miRNA:   3'- uuGCUUGUCGGC-----GC-GUAAGCGG-ACGu -5'
24819 3' -56.1 NC_005284.1 + 37025 0.68 0.469499
Target:  5'- cGCGAcgucagcaGCAGCCaGCGCccgagccggugCGCCUGCGc -3'
miRNA:   3'- uUGCU--------UGUCGG-CGCGuaa--------GCGGACGU- -5'
24819 3' -56.1 NC_005284.1 + 29128 0.69 0.453318
Target:  5'- cGCGAACGGCUGCGC---CGCCUu-- -3'
miRNA:   3'- uUGCUUGUCGGCGCGuaaGCGGAcgu -5'
24819 3' -56.1 NC_005284.1 + 47701 0.69 0.453318
Target:  5'- cAAgGAAgGGCaCGCGCGcUCGCgUGCGc -3'
miRNA:   3'- -UUgCUUgUCG-GCGCGUaAGCGgACGU- -5'
24819 3' -56.1 NC_005284.1 + 20818 0.69 0.414249
Target:  5'- -uCGAGCAGCC-CGCAgcagCGCCgGCc -3'
miRNA:   3'- uuGCUUGUCGGcGCGUaa--GCGGaCGu -5'
24819 3' -56.1 NC_005284.1 + 22279 0.69 0.41235
Target:  5'- uGACGAACAGCCaGCGCGaggcaaucgaGUUUGCAg -3'
miRNA:   3'- -UUGCUUGUCGG-CGCGUaag-------CGGACGU- -5'
24819 3' -56.1 NC_005284.1 + 21562 0.7 0.402937
Target:  5'- cGACGAGCAgGCCGCGCGggcguucgacgCGCagcgGCAu -3'
miRNA:   3'- -UUGCUUGU-CGGCGCGUaa---------GCGga--CGU- -5'
24819 3' -56.1 NC_005284.1 + 8984 0.7 0.395506
Target:  5'- uGCGGACAccuucGCCGaGCAUgccgaCGCCUGCGc -3'
miRNA:   3'- uUGCUUGU-----CGGCgCGUAa----GCGGACGU- -5'
24819 3' -56.1 NC_005284.1 + 35583 0.7 0.395506
Target:  5'- cACGGuuuguacaGCGGCCGCGUugucguucaccUUCGCCUGUAc -3'
miRNA:   3'- uUGCU--------UGUCGGCGCGu----------AAGCGGACGU- -5'
24819 3' -56.1 NC_005284.1 + 42638 0.7 0.37732
Target:  5'- gAGCcGACAGCCGCGC--UUGCC-GCAc -3'
miRNA:   3'- -UUGcUUGUCGGCGCGuaAGCGGaCGU- -5'
24819 3' -56.1 NC_005284.1 + 3484 0.7 0.36844
Target:  5'- cGACGGcuACGGCUGCGCAggaCGCCUugaaaGCGu -3'
miRNA:   3'- -UUGCU--UGUCGGCGCGUaa-GCGGA-----CGU- -5'
24819 3' -56.1 NC_005284.1 + 5600 0.7 0.366681
Target:  5'- aAGCGGGCAGCCucGCGCAgcauuuccuccaUCGCCUcGCc -3'
miRNA:   3'- -UUGCUUGUCGG--CGCGUa-----------AGCGGA-CGu -5'
24819 3' -56.1 NC_005284.1 + 21774 0.7 0.359705
Target:  5'- -cUGAGCGGCUGCGCG-UCGCUguccgacacUGCAc -3'
miRNA:   3'- uuGCUUGUCGGCGCGUaAGCGG---------ACGU- -5'
24819 3' -56.1 NC_005284.1 + 53888 0.7 0.359705
Target:  5'- gGAUGGGCGGCCGUcgucgcuuGCcUUgGCCUGCGc -3'
miRNA:   3'- -UUGCUUGUCGGCG--------CGuAAgCGGACGU- -5'
24819 3' -56.1 NC_005284.1 + 9717 0.71 0.351115
Target:  5'- cACGAGCgcguAGCCGCGC--UCGCCcGCc -3'
miRNA:   3'- uUGCUUG----UCGGCGCGuaAGCGGaCGu -5'
24819 3' -56.1 NC_005284.1 + 23353 0.71 0.334377
Target:  5'- cGGCGcgccGCAGCgGCGCAcgUCGCCcGCGa -3'
miRNA:   3'- -UUGCu---UGUCGgCGCGUa-AGCGGaCGU- -5'
24819 3' -56.1 NC_005284.1 + 44711 0.71 0.325422
Target:  5'- cGCGGucGCGgucGCCGCGCGUUCcgcucgcucacgaGCCUGCGu -3'
miRNA:   3'- uUGCU--UGU---CGGCGCGUAAG-------------CGGACGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.