Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24819 | 3' | -56.1 | NC_005284.1 | + | 23353 | 0.71 | 0.334377 |
Target: 5'- cGGCGcgccGCAGCgGCGCAcgUCGCCcGCGa -3' miRNA: 3'- -UUGCu---UGUCGgCGCGUa-AGCGGaCGU- -5' |
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24819 | 3' | -56.1 | NC_005284.1 | + | 29128 | 0.69 | 0.453318 |
Target: 5'- cGCGAACGGCUGCGC---CGCCUu-- -3' miRNA: 3'- uUGCUUGUCGGCGCGuaaGCGGAcgu -5' |
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24819 | 3' | -56.1 | NC_005284.1 | + | 30924 | 0.67 | 0.536905 |
Target: 5'- gGGCGGGC-GCCgugGCGCuUUCGCCgccgGCGa -3' miRNA: 3'- -UUGCUUGuCGG---CGCGuAAGCGGa---CGU- -5' |
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24819 | 3' | -56.1 | NC_005284.1 | + | 32228 | 0.67 | 0.526125 |
Target: 5'- --gGAAuCAGCuuucCGCGCGUgaauccuuUCGCCUGCGc -3' miRNA: 3'- uugCUU-GUCG----GCGCGUA--------AGCGGACGU- -5' |
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24819 | 3' | -56.1 | NC_005284.1 | + | 33224 | 0.66 | 0.591783 |
Target: 5'- -uCGAACGcCCGCGCG---GCCUGCu -3' miRNA: 3'- uuGCUUGUcGGCGCGUaagCGGACGu -5' |
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24819 | 3' | -56.1 | NC_005284.1 | + | 33271 | 0.72 | 0.280454 |
Target: 5'- gGGCGAuGCuGCCGCGCGUgcuucUUGCCaUGCAu -3' miRNA: 3'- -UUGCU-UGuCGGCGCGUA-----AGCGG-ACGU- -5' |
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24819 | 3' | -56.1 | NC_005284.1 | + | 35294 | 0.66 | 0.636358 |
Target: 5'- uGCGcuACAGUCGaCGCGUUCGUgguaCUGCu -3' miRNA: 3'- uUGCu-UGUCGGC-GCGUAAGCG----GACGu -5' |
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24819 | 3' | -56.1 | NC_005284.1 | + | 35372 | 0.74 | 0.204415 |
Target: 5'- cAACGAACGG-CGCGCcgaucaCGCCUGCAc -3' miRNA: 3'- -UUGCUUGUCgGCGCGuaa---GCGGACGU- -5' |
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24819 | 3' | -56.1 | NC_005284.1 | + | 35583 | 0.7 | 0.395506 |
Target: 5'- cACGGuuuguacaGCGGCCGCGUugucguucaccUUCGCCUGUAc -3' miRNA: 3'- uUGCU--------UGUCGGCGCGu----------AAGCGGACGU- -5' |
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24819 | 3' | -56.1 | NC_005284.1 | + | 37025 | 0.68 | 0.469499 |
Target: 5'- cGCGAcgucagcaGCAGCCaGCGCccgagccggugCGCCUGCGc -3' miRNA: 3'- uUGCU--------UGUCGG-CGCGuaa--------GCGGACGU- -5' |
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24819 | 3' | -56.1 | NC_005284.1 | + | 39317 | 0.66 | 0.636358 |
Target: 5'- cGGCGAGauacCAGUCGCGCAcgaUCGCgUaGCAg -3' miRNA: 3'- -UUGCUU----GUCGGCGCGUa--AGCGgA-CGU- -5' |
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24819 | 3' | -56.1 | NC_005284.1 | + | 40278 | 0.66 | 0.636358 |
Target: 5'- cGGCGAugGCuGCUGCGCGUcggaUGUCUGCu -3' miRNA: 3'- -UUGCU--UGuCGGCGCGUAa---GCGGACGu -5' |
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24819 | 3' | -56.1 | NC_005284.1 | + | 42638 | 0.7 | 0.37732 |
Target: 5'- gAGCcGACAGCCGCGC--UUGCC-GCAc -3' miRNA: 3'- -UUGcUUGUCGGCGCGuaAGCGGaCGU- -5' |
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24819 | 3' | -56.1 | NC_005284.1 | + | 42954 | 0.68 | 0.514363 |
Target: 5'- cGCGAGCcgcugcucgagauAGCCGCGCucgcgcgCGaCCUGCu -3' miRNA: 3'- uUGCUUG-------------UCGGCGCGuaa----GC-GGACGu -5' |
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24819 | 3' | -56.1 | NC_005284.1 | + | 43192 | 0.73 | 0.266372 |
Target: 5'- uGACGcuCGGCCGCGUAgUCGCCgaGCu -3' miRNA: 3'- -UUGCuuGUCGGCGCGUaAGCGGa-CGu -5' |
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24819 | 3' | -56.1 | NC_005284.1 | + | 44657 | 0.67 | 0.536905 |
Target: 5'- cGCGAGCGccGuCUGCGCcgUCGCC-GCGc -3' miRNA: 3'- uUGCUUGU--C-GGCGCGuaAGCGGaCGU- -5' |
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24819 | 3' | -56.1 | NC_005284.1 | + | 44711 | 0.71 | 0.325422 |
Target: 5'- cGCGGucGCGgucGCCGCGCGUUCcgcucgcucacgaGCCUGCGu -3' miRNA: 3'- uUGCU--UGU---CGGCGCGUAAG-------------CGGACGU- -5' |
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24819 | 3' | -56.1 | NC_005284.1 | + | 45477 | 0.67 | 0.536905 |
Target: 5'- uGACGAucuccgucuGCAGgCGCGUcaUCGUCUGCc -3' miRNA: 3'- -UUGCU---------UGUCgGCGCGuaAGCGGACGu -5' |
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24819 | 3' | -56.1 | NC_005284.1 | + | 46766 | 1.06 | 0.001031 |
Target: 5'- gAACGAACAGCCGCGCAUUCGCCUGCAu -3' miRNA: 3'- -UUGCUUGUCGGCGCGUAAGCGGACGU- -5' |
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24819 | 3' | -56.1 | NC_005284.1 | + | 47701 | 0.69 | 0.453318 |
Target: 5'- cAAgGAAgGGCaCGCGCGcUCGCgUGCGc -3' miRNA: 3'- -UUgCUUgUCG-GCGCGUaAGCGgACGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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