miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24819 3' -56.1 NC_005284.1 + 1276 0.67 0.558683
Target:  5'- -uCGAGgGGCCGUGCuucgacaagCGCCgGCAg -3'
miRNA:   3'- uuGCUUgUCGGCGCGuaa------GCGGaCGU- -5'
24819 3' -56.1 NC_005284.1 + 3484 0.7 0.36844
Target:  5'- cGACGGcuACGGCUGCGCAggaCGCCUugaaaGCGu -3'
miRNA:   3'- -UUGCU--UGUCGGCGCGUaa-GCGGA-----CGU- -5'
24819 3' -56.1 NC_005284.1 + 3719 0.67 0.558683
Target:  5'- --aGAGCGGCCGgGCGUU-GCCgguucugugGCAg -3'
miRNA:   3'- uugCUUGUCGGCgCGUAAgCGGa--------CGU- -5'
24819 3' -56.1 NC_005284.1 + 4668 0.67 0.569667
Target:  5'- uGGCGAAC-GCCGCGUgcgcgaUCGCC-GCGu -3'
miRNA:   3'- -UUGCUUGuCGGCGCGua----AGCGGaCGU- -5'
24819 3' -56.1 NC_005284.1 + 5503 0.67 0.569667
Target:  5'- cGACGAGCGGCCgugaaGCGCGcUUCGUCa--- -3'
miRNA:   3'- -UUGCUUGUCGG-----CGCGU-AAGCGGacgu -5'
24819 3' -56.1 NC_005284.1 + 5600 0.7 0.366681
Target:  5'- aAGCGGGCAGCCucGCGCAgcauuuccuccaUCGCCUcGCc -3'
miRNA:   3'- -UUGCUUGUCGG--CGCGUa-----------AGCGGA-CGu -5'
24819 3' -56.1 NC_005284.1 + 5814 0.68 0.514363
Target:  5'- -cCGucCAGCCGCGCAgcaccgcUUCGUCgaUGCAg -3'
miRNA:   3'- uuGCuuGUCGGCGCGU-------AAGCGG--ACGU- -5'
24819 3' -56.1 NC_005284.1 + 8984 0.7 0.395506
Target:  5'- uGCGGACAccuucGCCGaGCAUgccgaCGCCUGCGc -3'
miRNA:   3'- uUGCUUGU-----CGGCgCGUAa----GCGGACGU- -5'
24819 3' -56.1 NC_005284.1 + 9514 0.67 0.579597
Target:  5'- -cCGcGCAGCCGCGCGgagauaUCGagaagcaCCUGCGc -3'
miRNA:   3'- uuGCuUGUCGGCGCGUa-----AGC-------GGACGU- -5'
24819 3' -56.1 NC_005284.1 + 9717 0.71 0.351115
Target:  5'- cACGAGCgcguAGCCGCGC--UCGCCcGCc -3'
miRNA:   3'- uUGCUUG----UCGGCGCGuaAGCGGaCGu -5'
24819 3' -56.1 NC_005284.1 + 9789 0.67 0.536905
Target:  5'- -uCGcAACGGCgCGCGCcaacgUCGCCgGCAg -3'
miRNA:   3'- uuGC-UUGUCG-GCGCGua---AGCGGaCGU- -5'
24819 3' -56.1 NC_005284.1 + 10637 0.67 0.580702
Target:  5'- cGACGAGCGGCgGCGaa---GCgCUGCGc -3'
miRNA:   3'- -UUGCUUGUCGgCGCguaagCG-GACGU- -5'
24819 3' -56.1 NC_005284.1 + 10756 0.66 0.614038
Target:  5'- --aGGGgGGCCGCcgaggGCGUUCGgCUGCu -3'
miRNA:   3'- uugCUUgUCGGCG-----CGUAAGCgGACGu -5'
24819 3' -56.1 NC_005284.1 + 12341 0.67 0.569667
Target:  5'- aGGCGAucCGGCuuCGCGCgAUUCGCC-GCGg -3'
miRNA:   3'- -UUGCUu-GUCG--GCGCG-UAAGCGGaCGU- -5'
24819 3' -56.1 NC_005284.1 + 17380 0.67 0.536905
Target:  5'- gGGCGGcaaGgAGCCGUGC-UUCaCCUGCAa -3'
miRNA:   3'- -UUGCU---UgUCGGCGCGuAAGcGGACGU- -5'
24819 3' -56.1 NC_005284.1 + 20818 0.69 0.414249
Target:  5'- -uCGAGCAGCC-CGCAgcagCGCCgGCc -3'
miRNA:   3'- uuGCUUGUCGGcGCGUaa--GCGGaCGu -5'
24819 3' -56.1 NC_005284.1 + 21562 0.7 0.402937
Target:  5'- cGACGAGCAgGCCGCGCGggcguucgacgCGCagcgGCAu -3'
miRNA:   3'- -UUGCUUGU-CGGCGCGUaa---------GCGga--CGU- -5'
24819 3' -56.1 NC_005284.1 + 21642 0.67 0.54776
Target:  5'- -cCGAGCAG-CGUGCGaUCGCCgcGCAc -3'
miRNA:   3'- uuGCUUGUCgGCGCGUaAGCGGa-CGU- -5'
24819 3' -56.1 NC_005284.1 + 21774 0.7 0.359705
Target:  5'- -cUGAGCGGCUGCGCG-UCGCUguccgacacUGCAc -3'
miRNA:   3'- uuGCUUGUCGGCGCGUaAGCGG---------ACGU- -5'
24819 3' -56.1 NC_005284.1 + 22279 0.69 0.41235
Target:  5'- uGACGAACAGCCaGCGCGaggcaaucgaGUUUGCAg -3'
miRNA:   3'- -UUGCUUGUCGG-CGCGUaag-------CGGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.