miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24819 3' -56.1 NC_005284.1 + 33271 0.72 0.280454
Target:  5'- gGGCGAuGCuGCCGCGCGUgcuucUUGCCaUGCAu -3'
miRNA:   3'- -UUGCU-UGuCGGCGCGUA-----AGCGG-ACGU- -5'
24819 3' -56.1 NC_005284.1 + 21642 0.67 0.54776
Target:  5'- -cCGAGCAG-CGUGCGaUCGCCgcGCAc -3'
miRNA:   3'- uuGCUUGUCgGCGCGUaAGCGGa-CGU- -5'
24819 3' -56.1 NC_005284.1 + 3719 0.67 0.558683
Target:  5'- --aGAGCGGCCGgGCGUU-GCCgguucugugGCAg -3'
miRNA:   3'- uugCUUGUCGGCgCGUAAgCGGa--------CGU- -5'
24819 3' -56.1 NC_005284.1 + 1276 0.67 0.558683
Target:  5'- -uCGAGgGGCCGUGCuucgacaagCGCCgGCAg -3'
miRNA:   3'- uuGCUUgUCGGCGCGuaa------GCGGaCGU- -5'
24819 3' -56.1 NC_005284.1 + 12341 0.67 0.569667
Target:  5'- aGGCGAucCGGCuuCGCGCgAUUCGCC-GCGg -3'
miRNA:   3'- -UUGCUu-GUCG--GCGCG-UAAGCGGaCGU- -5'
24819 3' -56.1 NC_005284.1 + 10637 0.67 0.580702
Target:  5'- cGACGAGCGGCgGCGaa---GCgCUGCGc -3'
miRNA:   3'- -UUGCUUGUCGgCGCguaagCG-GACGU- -5'
24819 3' -56.1 NC_005284.1 + 53336 0.66 0.591783
Target:  5'- gGACGcacuGCGGCUGuCGC-UUCGCCaGCGc -3'
miRNA:   3'- -UUGCu---UGUCGGC-GCGuAAGCGGaCGU- -5'
24819 3' -56.1 NC_005284.1 + 10756 0.66 0.614038
Target:  5'- --aGGGgGGCCGCcgaggGCGUUCGgCUGCu -3'
miRNA:   3'- uugCUUgUCGGCG-----CGUAAGCgGACGu -5'
24819 3' -56.1 NC_005284.1 + 35294 0.66 0.636358
Target:  5'- uGCGcuACAGUCGaCGCGUUCGUgguaCUGCu -3'
miRNA:   3'- uUGCu-UGUCGGC-GCGUAAGCG----GACGu -5'
24819 3' -56.1 NC_005284.1 + 30924 0.67 0.536905
Target:  5'- gGGCGGGC-GCCgugGCGCuUUCGCCgccgGCGa -3'
miRNA:   3'- -UUGCUUGuCGG---CGCGuAAGCGGa---CGU- -5'
24819 3' -56.1 NC_005284.1 + 17380 0.67 0.536905
Target:  5'- gGGCGGcaaGgAGCCGUGC-UUCaCCUGCAa -3'
miRNA:   3'- -UUGCU---UgUCGGCGCGuAAGcGGACGU- -5'
24819 3' -56.1 NC_005284.1 + 21774 0.7 0.359705
Target:  5'- -cUGAGCGGCUGCGCG-UCGCUguccgacacUGCAc -3'
miRNA:   3'- uuGCUUGUCGGCGCGUaAGCGG---------ACGU- -5'
24819 3' -56.1 NC_005284.1 + 53888 0.7 0.359705
Target:  5'- gGAUGGGCGGCCGUcgucgcuuGCcUUgGCCUGCGc -3'
miRNA:   3'- -UUGCUUGUCGGCG--------CGuAAgCGGACGU- -5'
24819 3' -56.1 NC_005284.1 + 3484 0.7 0.36844
Target:  5'- cGACGGcuACGGCUGCGCAggaCGCCUugaaaGCGu -3'
miRNA:   3'- -UUGCU--UGUCGGCGCGUaa-GCGGA-----CGU- -5'
24819 3' -56.1 NC_005284.1 + 21562 0.7 0.402937
Target:  5'- cGACGAGCAgGCCGCGCGggcguucgacgCGCagcgGCAu -3'
miRNA:   3'- -UUGCUUGU-CGGCGCGUaa---------GCGga--CGU- -5'
24819 3' -56.1 NC_005284.1 + 47701 0.69 0.453318
Target:  5'- cAAgGAAgGGCaCGCGCGcUCGCgUGCGc -3'
miRNA:   3'- -UUgCUUgUCG-GCGCGUaAGCGgACGU- -5'
24819 3' -56.1 NC_005284.1 + 52999 0.68 0.515428
Target:  5'- cGCGGugGGCauCGCGUUUGCCgcUGCAc -3'
miRNA:   3'- uUGCUugUCGgcGCGUAAGCGG--ACGU- -5'
24819 3' -56.1 NC_005284.1 + 32228 0.67 0.526125
Target:  5'- --gGAAuCAGCuuucCGCGCGUgaauccuuUCGCCUGCGc -3'
miRNA:   3'- uugCUU-GUCG----GCGCGUA--------AGCGGACGU- -5'
24819 3' -56.1 NC_005284.1 + 9789 0.67 0.536905
Target:  5'- -uCGcAACGGCgCGCGCcaacgUCGCCgGCAg -3'
miRNA:   3'- uuGC-UUGUCG-GCGCGua---AGCGGaCGU- -5'
24819 3' -56.1 NC_005284.1 + 46766 1.06 0.001031
Target:  5'- gAACGAACAGCCGCGCAUUCGCCUGCAu -3'
miRNA:   3'- -UUGCUUGUCGGCGCGUAAGCGGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.