miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24819 3' -56.1 NC_005284.1 + 33224 0.66 0.591783
Target:  5'- -uCGAACGcCCGCGCG---GCCUGCu -3'
miRNA:   3'- uuGCUUGUcGGCGCGUaagCGGACGu -5'
24819 3' -56.1 NC_005284.1 + 42638 0.7 0.37732
Target:  5'- gAGCcGACAGCCGCGC--UUGCC-GCAc -3'
miRNA:   3'- -UUGcUUGUCGGCGCGuaAGCGGaCGU- -5'
24819 3' -56.1 NC_005284.1 + 9717 0.71 0.351115
Target:  5'- cACGAGCgcguAGCCGCGC--UCGCCcGCc -3'
miRNA:   3'- uUGCUUG----UCGGCGCGuaAGCGGaCGu -5'
24819 3' -56.1 NC_005284.1 + 46766 1.06 0.001031
Target:  5'- gAACGAACAGCCGCGCAUUCGCCUGCAu -3'
miRNA:   3'- -UUGCUUGUCGGCGCGUAAGCGGACGU- -5'
24819 3' -56.1 NC_005284.1 + 4668 0.67 0.569667
Target:  5'- uGGCGAAC-GCCGCGUgcgcgaUCGCC-GCGu -3'
miRNA:   3'- -UUGCUUGuCGGCGCGua----AGCGGaCGU- -5'
24819 3' -56.1 NC_005284.1 + 45477 0.67 0.536905
Target:  5'- uGACGAucuccgucuGCAGgCGCGUcaUCGUCUGCc -3'
miRNA:   3'- -UUGCU---------UGUCgGCGCGuaAGCGGACGu -5'
24819 3' -56.1 NC_005284.1 + 5814 0.68 0.514363
Target:  5'- -cCGucCAGCCGCGCAgcaccgcUUCGUCgaUGCAg -3'
miRNA:   3'- uuGCuuGUCGGCGCGU-------AAGCGG--ACGU- -5'
24819 3' -56.1 NC_005284.1 + 50614 0.68 0.50482
Target:  5'- -uCGAGCAGCCGauucaCGuCGUUCGCCaUGUc -3'
miRNA:   3'- uuGCUUGUCGGC-----GC-GUAAGCGG-ACGu -5'
24819 3' -56.1 NC_005284.1 + 40278 0.66 0.636358
Target:  5'- cGGCGAugGCuGCUGCGCGUcggaUGUCUGCu -3'
miRNA:   3'- -UUGCU--UGuCGGCGCGUAa---GCGGACGu -5'
24819 3' -56.1 NC_005284.1 + 8984 0.7 0.395506
Target:  5'- uGCGGACAccuucGCCGaGCAUgccgaCGCCUGCGc -3'
miRNA:   3'- uUGCUUGU-----CGGCgCGUAa----GCGGACGU- -5'
24819 3' -56.1 NC_005284.1 + 20818 0.69 0.414249
Target:  5'- -uCGAGCAGCC-CGCAgcagCGCCgGCc -3'
miRNA:   3'- uuGCUUGUCGGcGCGUaa--GCGGaCGu -5'
24819 3' -56.1 NC_005284.1 + 29128 0.69 0.453318
Target:  5'- cGCGAACGGCUGCGC---CGCCUu-- -3'
miRNA:   3'- uUGCUUGUCGGCGCGuaaGCGGAcgu -5'
24819 3' -56.1 NC_005284.1 + 9514 0.67 0.579597
Target:  5'- -cCGcGCAGCCGCGCGgagauaUCGagaagcaCCUGCGc -3'
miRNA:   3'- uuGCuUGUCGGCGCGUa-----AGC-------GGACGU- -5'
24819 3' -56.1 NC_005284.1 + 22279 0.69 0.41235
Target:  5'- uGACGAACAGCCaGCGCGaggcaaucgaGUUUGCAg -3'
miRNA:   3'- -UUGCUUGUCGG-CGCGUaag-------CGGACGU- -5'
24819 3' -56.1 NC_005284.1 + 5503 0.67 0.569667
Target:  5'- cGACGAGCGGCCgugaaGCGCGcUUCGUCa--- -3'
miRNA:   3'- -UUGCUUGUCGG-----CGCGU-AAGCGGacgu -5'
24819 3' -56.1 NC_005284.1 + 37025 0.68 0.469499
Target:  5'- cGCGAcgucagcaGCAGCCaGCGCccgagccggugCGCCUGCGc -3'
miRNA:   3'- uUGCU--------UGUCGG-CGCGuaa--------GCGGACGU- -5'
24819 3' -56.1 NC_005284.1 + 35583 0.7 0.395506
Target:  5'- cACGGuuuguacaGCGGCCGCGUugucguucaccUUCGCCUGUAc -3'
miRNA:   3'- uUGCU--------UGUCGGCGCGu----------AAGCGGACGU- -5'
24819 3' -56.1 NC_005284.1 + 5600 0.7 0.366681
Target:  5'- aAGCGGGCAGCCucGCGCAgcauuuccuccaUCGCCUcGCc -3'
miRNA:   3'- -UUGCUUGUCGG--CGCGUa-----------AGCGGA-CGu -5'
24819 3' -56.1 NC_005284.1 + 44657 0.67 0.536905
Target:  5'- cGCGAGCGccGuCUGCGCcgUCGCC-GCGc -3'
miRNA:   3'- uUGCUUGU--C-GGCGCGuaAGCGGaCGU- -5'
24819 3' -56.1 NC_005284.1 + 42954 0.68 0.514363
Target:  5'- cGCGAGCcgcugcucgagauAGCCGCGCucgcgcgCGaCCUGCu -3'
miRNA:   3'- uUGCUUG-------------UCGGCGCGuaa----GC-GGACGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.