miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24819 3' -56.1 NC_005284.1 + 53888 0.7 0.359705
Target:  5'- gGAUGGGCGGCCGUcgucgcuuGCcUUgGCCUGCGc -3'
miRNA:   3'- -UUGCUUGUCGGCG--------CGuAAgCGGACGU- -5'
24819 3' -56.1 NC_005284.1 + 53336 0.66 0.591783
Target:  5'- gGACGcacuGCGGCUGuCGC-UUCGCCaGCGc -3'
miRNA:   3'- -UUGCu---UGUCGGC-GCGuAAGCGGaCGU- -5'
24819 3' -56.1 NC_005284.1 + 52999 0.68 0.515428
Target:  5'- cGCGGugGGCauCGCGUUUGCCgcUGCAc -3'
miRNA:   3'- uUGCUugUCGgcGCGUAAGCGG--ACGU- -5'
24819 3' -56.1 NC_005284.1 + 50614 0.68 0.50482
Target:  5'- -uCGAGCAGCCGauucaCGuCGUUCGCCaUGUc -3'
miRNA:   3'- uuGCUUGUCGGC-----GC-GUAAGCGG-ACGu -5'
24819 3' -56.1 NC_005284.1 + 47701 0.69 0.453318
Target:  5'- cAAgGAAgGGCaCGCGCGcUCGCgUGCGc -3'
miRNA:   3'- -UUgCUUgUCG-GCGCGUaAGCGgACGU- -5'
24819 3' -56.1 NC_005284.1 + 46766 1.06 0.001031
Target:  5'- gAACGAACAGCCGCGCAUUCGCCUGCAu -3'
miRNA:   3'- -UUGCUUGUCGGCGCGUAAGCGGACGU- -5'
24819 3' -56.1 NC_005284.1 + 45477 0.67 0.536905
Target:  5'- uGACGAucuccgucuGCAGgCGCGUcaUCGUCUGCc -3'
miRNA:   3'- -UUGCU---------UGUCgGCGCGuaAGCGGACGu -5'
24819 3' -56.1 NC_005284.1 + 44711 0.71 0.325422
Target:  5'- cGCGGucGCGgucGCCGCGCGUUCcgcucgcucacgaGCCUGCGu -3'
miRNA:   3'- uUGCU--UGU---CGGCGCGUAAG-------------CGGACGU- -5'
24819 3' -56.1 NC_005284.1 + 44657 0.67 0.536905
Target:  5'- cGCGAGCGccGuCUGCGCcgUCGCC-GCGc -3'
miRNA:   3'- uUGCUUGU--C-GGCGCGuaAGCGGaCGU- -5'
24819 3' -56.1 NC_005284.1 + 43192 0.73 0.266372
Target:  5'- uGACGcuCGGCCGCGUAgUCGCCgaGCu -3'
miRNA:   3'- -UUGCuuGUCGGCGCGUaAGCGGa-CGu -5'
24819 3' -56.1 NC_005284.1 + 42954 0.68 0.514363
Target:  5'- cGCGAGCcgcugcucgagauAGCCGCGCucgcgcgCGaCCUGCu -3'
miRNA:   3'- uUGCUUG-------------UCGGCGCGuaa----GC-GGACGu -5'
24819 3' -56.1 NC_005284.1 + 42638 0.7 0.37732
Target:  5'- gAGCcGACAGCCGCGC--UUGCC-GCAc -3'
miRNA:   3'- -UUGcUUGUCGGCGCGuaAGCGGaCGU- -5'
24819 3' -56.1 NC_005284.1 + 40278 0.66 0.636358
Target:  5'- cGGCGAugGCuGCUGCGCGUcggaUGUCUGCu -3'
miRNA:   3'- -UUGCU--UGuCGGCGCGUAa---GCGGACGu -5'
24819 3' -56.1 NC_005284.1 + 39317 0.66 0.636358
Target:  5'- cGGCGAGauacCAGUCGCGCAcgaUCGCgUaGCAg -3'
miRNA:   3'- -UUGCUU----GUCGGCGCGUa--AGCGgA-CGU- -5'
24819 3' -56.1 NC_005284.1 + 37025 0.68 0.469499
Target:  5'- cGCGAcgucagcaGCAGCCaGCGCccgagccggugCGCCUGCGc -3'
miRNA:   3'- uUGCU--------UGUCGG-CGCGuaa--------GCGGACGU- -5'
24819 3' -56.1 NC_005284.1 + 35583 0.7 0.395506
Target:  5'- cACGGuuuguacaGCGGCCGCGUugucguucaccUUCGCCUGUAc -3'
miRNA:   3'- uUGCU--------UGUCGGCGCGu----------AAGCGGACGU- -5'
24819 3' -56.1 NC_005284.1 + 35372 0.74 0.204415
Target:  5'- cAACGAACGG-CGCGCcgaucaCGCCUGCAc -3'
miRNA:   3'- -UUGCUUGUCgGCGCGuaa---GCGGACGU- -5'
24819 3' -56.1 NC_005284.1 + 35294 0.66 0.636358
Target:  5'- uGCGcuACAGUCGaCGCGUUCGUgguaCUGCu -3'
miRNA:   3'- uUGCu-UGUCGGC-GCGUAAGCG----GACGu -5'
24819 3' -56.1 NC_005284.1 + 33271 0.72 0.280454
Target:  5'- gGGCGAuGCuGCCGCGCGUgcuucUUGCCaUGCAu -3'
miRNA:   3'- -UUGCU-UGuCGGCGCGUA-----AGCGG-ACGU- -5'
24819 3' -56.1 NC_005284.1 + 33224 0.66 0.591783
Target:  5'- -uCGAACGcCCGCGCG---GCCUGCu -3'
miRNA:   3'- uuGCUUGUcGGCGCGUaagCGGACGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.