miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24819 5' -55 NC_005284.1 + 11389 0.68 0.611644
Target:  5'- aUUugUCGCGCcucgacaGCGCGgGACUUgaCGCg -3'
miRNA:   3'- cAGugAGCGCG-------CGCGC-UUGAAgaGCG- -5'
24819 5' -55 NC_005284.1 + 11819 0.71 0.464436
Target:  5'- gGUCGCgCGCGaGCGCGGcuaucucgagcaGCggCUCGCg -3'
miRNA:   3'- -CAGUGaGCGCgCGCGCU------------UGaaGAGCG- -5'
24819 5' -55 NC_005284.1 + 12826 0.7 0.494889
Target:  5'- -cCGCuUCGCGCcCGCGGACUcUUCGUc -3'
miRNA:   3'- caGUG-AGCGCGcGCGCUUGAaGAGCG- -5'
24819 5' -55 NC_005284.1 + 13401 0.65 0.759281
Target:  5'- -cCACUCGCGaaacaucgugacCGCGGGCgugUCUCGg -3'
miRNA:   3'- caGUGAGCGCgc----------GCGCUUGa--AGAGCg -5'
24819 5' -55 NC_005284.1 + 14625 0.66 0.742738
Target:  5'- -aCGCUCGCGCGCuaccucgacgccGUGAAUUUUcCGg -3'
miRNA:   3'- caGUGAGCGCGCG------------CGCUUGAAGaGCg -5'
24819 5' -55 NC_005284.1 + 15093 0.67 0.689415
Target:  5'- -gCGCUCGCagaguaucCGCGCGAguGCUgcgggCUCGUc -3'
miRNA:   3'- caGUGAGCGc-------GCGCGCU--UGAa----GAGCG- -5'
24819 5' -55 NC_005284.1 + 15726 0.72 0.415968
Target:  5'- cGUCugUCGaCGCGCGCGGugUggg-GCg -3'
miRNA:   3'- -CAGugAGC-GCGCGCGCUugAagagCG- -5'
24819 5' -55 NC_005284.1 + 16200 0.74 0.298121
Target:  5'- cUCGC-CGCGUGCGCucggccGAACggccgUCUCGCu -3'
miRNA:   3'- cAGUGaGCGCGCGCG------CUUGa----AGAGCG- -5'
24819 5' -55 NC_005284.1 + 17035 0.7 0.526219
Target:  5'- -cCGCUUGcCGCGCGCGGGauuuccUCUCGg -3'
miRNA:   3'- caGUGAGC-GCGCGCGCUUga----AGAGCg -5'
24819 5' -55 NC_005284.1 + 17333 0.71 0.464436
Target:  5'- aUC-CUCGCGC-CGaCGAugUUcCUCGCg -3'
miRNA:   3'- cAGuGAGCGCGcGC-GCUugAA-GAGCG- -5'
24819 5' -55 NC_005284.1 + 24373 0.66 0.753114
Target:  5'- cUCGCcgUCGCGCaCGCGGACga-UCGa -3'
miRNA:   3'- cAGUG--AGCGCGcGCGCUUGaagAGCg -5'
24819 5' -55 NC_005284.1 + 24627 0.67 0.700234
Target:  5'- cGUCACcUGUGCG-GCGAACUgaccgucuUCagUCGCg -3'
miRNA:   3'- -CAGUGaGCGCGCgCGCUUGA--------AG--AGCG- -5'
24819 5' -55 NC_005284.1 + 26305 0.66 0.742738
Target:  5'- -gCACUgCgGCGCGUGCGAGCggaaaGCa -3'
miRNA:   3'- caGUGA-G-CGCGCGCGCUUGaagagCG- -5'
24819 5' -55 NC_005284.1 + 26997 0.71 0.424465
Target:  5'- -cCACUCGUccgaaaaGgGCGCGAccGgUUCUCGCa -3'
miRNA:   3'- caGUGAGCG-------CgCGCGCU--UgAAGAGCG- -5'
24819 5' -55 NC_005284.1 + 30411 0.68 0.612742
Target:  5'- uGUCGaucgucCGCGUGCGCGAcggcgagguGCUgUUUCGCg -3'
miRNA:   3'- -CAGUga----GCGCGCGCGCU---------UGA-AGAGCG- -5'
24819 5' -55 NC_005284.1 + 31010 0.66 0.754145
Target:  5'- -cCGC-CGUGCGUGCGGAaguugccgguuggCUCGCu -3'
miRNA:   3'- caGUGaGCGCGCGCGCUUgaa----------GAGCG- -5'
24819 5' -55 NC_005284.1 + 32989 0.65 0.763367
Target:  5'- gGUCACUCGCucCGCaGCGGGCgaugCU-GCu -3'
miRNA:   3'- -CAGUGAGCGc-GCG-CGCUUGaa--GAgCG- -5'
24819 5' -55 NC_005284.1 + 33171 0.69 0.558265
Target:  5'- cGUCGagCGCgGCGCGCGAGa-UCUUGCc -3'
miRNA:   3'- -CAGUgaGCG-CGCGCGCUUgaAGAGCG- -5'
24819 5' -55 NC_005284.1 + 33277 0.66 0.742738
Target:  5'- --uGCU-GC-CGCGCGuGCUUCUUGCc -3'
miRNA:   3'- cagUGAgCGcGCGCGCuUGAAGAGCG- -5'
24819 5' -55 NC_005284.1 + 33628 0.67 0.678541
Target:  5'- cGUUGCUCGagcCGCGCGCGGcaUUCaucaCGCg -3'
miRNA:   3'- -CAGUGAGC---GCGCGCGCUugAAGa---GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.