miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24819 5' -55 NC_005284.1 + 112 0.71 0.454503
Target:  5'- -cCGCUCGCGCGC-CGu-CUUCgcCGCg -3'
miRNA:   3'- caGUGAGCGCGCGcGCuuGAAGa-GCG- -5'
24819 5' -55 NC_005284.1 + 1254 0.66 0.736458
Target:  5'- aUCACgacUGCGgGCGCGAacaucgaggggccguGCUUCgacaagCGCc -3'
miRNA:   3'- cAGUGa--GCGCgCGCGCU---------------UGAAGa-----GCG- -5'
24819 5' -55 NC_005284.1 + 1293 0.7 0.515688
Target:  5'- --aGCccCGCGCG-GCGAaccggcgggGCUUCUCGCa -3'
miRNA:   3'- cagUGa-GCGCGCgCGCU---------UGAAGAGCG- -5'
24819 5' -55 NC_005284.1 + 4674 0.69 0.558265
Target:  5'- -aCGC-CGCGUGCGCGAucgccgcguuACgUUCUCGa -3'
miRNA:   3'- caGUGaGCGCGCGCGCU----------UG-AAGAGCg -5'
24819 5' -55 NC_005284.1 + 6486 0.68 0.617133
Target:  5'- --gGCUCGCcgaccuGCGUGCGGAUUUCgagaagcuugcgaaaUCGCa -3'
miRNA:   3'- cagUGAGCG------CGCGCGCUUGAAG---------------AGCG- -5'
24819 5' -55 NC_005284.1 + 6625 0.66 0.721663
Target:  5'- cGUCACUUcgccaGCGCGCGCcgGAAUgggCUCu- -3'
miRNA:   3'- -CAGUGAG-----CGCGCGCG--CUUGaa-GAGcg -5'
24819 5' -55 NC_005284.1 + 7250 0.71 0.464436
Target:  5'- uUgGCUCGcCGCGUGCGGGCUUUUUc- -3'
miRNA:   3'- cAgUGAGC-GCGCGCGCUUGAAGAGcg -5'
24819 5' -55 NC_005284.1 + 7490 0.68 0.642403
Target:  5'- uUCAgCUCGCGCGCguugaucacgcgGCGAcgGCcgucgaucacgaggUUCUCGCc -3'
miRNA:   3'- cAGU-GAGCGCGCG------------CGCU--UG--------------AAGAGCG- -5'
24819 5' -55 NC_005284.1 + 7695 0.67 0.689415
Target:  5'- -gUACagCGUGCGCGUGAGCggugCGCc -3'
miRNA:   3'- caGUGa-GCGCGCGCGCUUGaagaGCG- -5'
24819 5' -55 NC_005284.1 + 7991 0.69 0.558265
Target:  5'- ---gUUCGCGCGCGCGAgugACgacgCGCa -3'
miRNA:   3'- caguGAGCGCGCGCGCU---UGaagaGCG- -5'
24819 5' -55 NC_005284.1 + 8241 0.66 0.753114
Target:  5'- uGUCGCUCGCGC-UGCGg----CUCGg -3'
miRNA:   3'- -CAGUGAGCGCGcGCGCuugaaGAGCg -5'
24819 5' -55 NC_005284.1 + 8705 0.68 0.601778
Target:  5'- gGUCACggUGCGCGCGCucGACgcggCGCg -3'
miRNA:   3'- -CAGUGa-GCGCGCGCGc-UUGaagaGCG- -5'
24819 5' -55 NC_005284.1 + 8972 0.66 0.753114
Target:  5'- --uGCUCGaguGCGUGCGGACaccUUCGCc -3'
miRNA:   3'- cagUGAGCg--CGCGCGCUUGaa-GAGCG- -5'
24819 5' -55 NC_005284.1 + 9345 0.67 0.68833
Target:  5'- gGUCGCccgacaaUCGCGaCGcCGCGAAUaUCgUCGCc -3'
miRNA:   3'- -CAGUG-------AGCGC-GC-GCGCUUGaAG-AGCG- -5'
24819 5' -55 NC_005284.1 + 9438 0.68 0.634712
Target:  5'- uGUCGCUCGCGgcCGgGCGGAUUgC-CGUg -3'
miRNA:   3'- -CAGUGAGCGC--GCgCGCUUGAaGaGCG- -5'
24819 5' -55 NC_005284.1 + 9660 0.68 0.623723
Target:  5'- --aGCUCGCGgGCauGCGAGCgaugCGCg -3'
miRNA:   3'- cagUGAGCGCgCG--CGCUUGaagaGCG- -5'
24819 5' -55 NC_005284.1 + 9915 0.71 0.444686
Target:  5'- cGUCGCUCGCGCuCGCGcAGCagCggCGUa -3'
miRNA:   3'- -CAGUGAGCGCGcGCGC-UUGaaGa-GCG- -5'
24819 5' -55 NC_005284.1 + 10372 0.66 0.707769
Target:  5'- aGUCGCcaacgaggcaguaaUCGCGCGuCGaCGAACUcaUCGUu -3'
miRNA:   3'- -CAGUG--------------AGCGCGC-GC-GCUUGAagAGCG- -5'
24819 5' -55 NC_005284.1 + 10676 0.66 0.710987
Target:  5'- -gCGC-CGCGgGCGCGAucgacacgGCgggcCUCGCu -3'
miRNA:   3'- caGUGaGCGCgCGCGCU--------UGaa--GAGCG- -5'
24819 5' -55 NC_005284.1 + 11267 0.66 0.721663
Target:  5'- --gGCUCGCGCggcgaagggGgGCGGugUUCauUCGCu -3'
miRNA:   3'- cagUGAGCGCG---------CgCGCUugAAG--AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.