miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24819 5' -55 NC_005284.1 + 54671 0.67 0.667623
Target:  5'- uGUCACgcggCGaagacgGCGCGCGAGCgg-UUGCg -3'
miRNA:   3'- -CAGUGa---GCg-----CGCGCGCUUGaagAGCG- -5'
24819 5' -55 NC_005284.1 + 8705 0.68 0.601778
Target:  5'- gGUCACggUGCGCGCGCucGACgcggCGCg -3'
miRNA:   3'- -CAGUGa-GCGCGCGCGc-UUGaagaGCG- -5'
24819 5' -55 NC_005284.1 + 30411 0.68 0.612742
Target:  5'- uGUCGaucgucCGCGUGCGCGAcggcgagguGCUgUUUCGCg -3'
miRNA:   3'- -CAGUga----GCGCGCGCGCU---------UGA-AGAGCG- -5'
24819 5' -55 NC_005284.1 + 6486 0.68 0.617133
Target:  5'- --gGCUCGCcgaccuGCGUGCGGAUUUCgagaagcuugcgaaaUCGCa -3'
miRNA:   3'- cagUGAGCG------CGCGCGCUUGAAG---------------AGCG- -5'
24819 5' -55 NC_005284.1 + 9660 0.68 0.623723
Target:  5'- --aGCUCGCGgGCauGCGAGCgaugCGCg -3'
miRNA:   3'- cagUGAGCGCgCG--CGCUUGaagaGCG- -5'
24819 5' -55 NC_005284.1 + 39834 0.68 0.623723
Target:  5'- aUUGCaUGgGCGCGgcCGAugUUCUCGCu -3'
miRNA:   3'- cAGUGaGCgCGCGC--GCUugAAGAGCG- -5'
24819 5' -55 NC_005284.1 + 9438 0.68 0.634712
Target:  5'- uGUCGCUCGCGgcCGgGCGGAUUgC-CGUg -3'
miRNA:   3'- -CAGUGAGCGC--GCgCGCUUGAaGaGCG- -5'
24819 5' -55 NC_005284.1 + 36094 0.68 0.650089
Target:  5'- cGUCcggUGCGgGCGCGAgcagcuccuucaucuGCUUCUCGa -3'
miRNA:   3'- -CAGugaGCGCgCGCGCU---------------UGAAGAGCg -5'
24819 5' -55 NC_005284.1 + 47291 0.67 0.667623
Target:  5'- cGUCGC-CGCgugaucaacGCGCGCGAGCUgaacCGUc -3'
miRNA:   3'- -CAGUGaGCG---------CGCGCGCUUGAaga-GCG- -5'
24819 5' -55 NC_005284.1 + 49366 0.69 0.558265
Target:  5'- gGUCGCagcuUCGCcgaGCGCGAGCUgg-CGCg -3'
miRNA:   3'- -CAGUG----AGCGcg-CGCGCUUGAagaGCG- -5'
24819 5' -55 NC_005284.1 + 7991 0.69 0.558265
Target:  5'- ---gUUCGCGCGCGCGAgugACgacgCGCa -3'
miRNA:   3'- caguGAGCGCGCGCGCU---UGaagaGCG- -5'
24819 5' -55 NC_005284.1 + 47716 0.7 0.515688
Target:  5'- -gCGCUCGCGUGCGCaGAagGCcgugCUCGg -3'
miRNA:   3'- caGUGAGCGCGCGCG-CU--UGaa--GAGCg -5'
24819 5' -55 NC_005284.1 + 44898 0.74 0.298121
Target:  5'- cGUCGCUCacaacauccggGCGgGUGCGAAUcaCUCGCa -3'
miRNA:   3'- -CAGUGAG-----------CGCgCGCGCUUGaaGAGCG- -5'
24819 5' -55 NC_005284.1 + 51661 0.74 0.321032
Target:  5'- aUCACgCGCGCGCGaCGAucaGC-UUUCGCg -3'
miRNA:   3'- cAGUGaGCGCGCGC-GCU---UGaAGAGCG- -5'
24819 5' -55 NC_005284.1 + 15726 0.72 0.415968
Target:  5'- cGUCugUCGaCGCGCGCGGugUggg-GCg -3'
miRNA:   3'- -CAGugAGC-GCGCGCGCUugAagagCG- -5'
24819 5' -55 NC_005284.1 + 26997 0.71 0.424465
Target:  5'- -cCACUCGUccgaaaaGgGCGCGAccGgUUCUCGCa -3'
miRNA:   3'- caGUGAGCG-------CgCGCGCU--UgAAGAGCG- -5'
24819 5' -55 NC_005284.1 + 9915 0.71 0.444686
Target:  5'- cGUCGCUCGCGCuCGCGcAGCagCggCGUa -3'
miRNA:   3'- -CAGUGAGCGCGcGCGC-UUGaaGa-GCG- -5'
24819 5' -55 NC_005284.1 + 7250 0.71 0.464436
Target:  5'- uUgGCUCGcCGCGUGCGGGCUUUUUc- -3'
miRNA:   3'- cAgUGAGC-GCGCGCGCUUGAAGAGcg -5'
24819 5' -55 NC_005284.1 + 11819 0.71 0.464436
Target:  5'- gGUCGCgCGCGaGCGCGGcuaucucgagcaGCggCUCGCg -3'
miRNA:   3'- -CAGUGaGCGCgCGCGCU------------UGaaGAGCG- -5'
24819 5' -55 NC_005284.1 + 12826 0.7 0.494889
Target:  5'- -cCGCuUCGCGCcCGCGGACUcUUCGUc -3'
miRNA:   3'- caGUG-AGCGCGcGCGCUUGAaGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.