miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24819 5' -55 NC_005284.1 + 13401 0.65 0.759281
Target:  5'- -cCACUCGCGaaacaucgugacCGCGGGCgugUCUCGg -3'
miRNA:   3'- caGUGAGCGCgc----------GCGCUUGa--AGAGCg -5'
24819 5' -55 NC_005284.1 + 45131 0.68 0.612742
Target:  5'- aUCGCUCGCauGCcCGCGAGCUcggcCUgCGCu -3'
miRNA:   3'- cAGUGAGCG--CGcGCGCUUGAa---GA-GCG- -5'
24819 5' -55 NC_005284.1 + 11389 0.68 0.611644
Target:  5'- aUUugUCGCGCcucgacaGCGCGgGACUUgaCGCg -3'
miRNA:   3'- cAGugAGCGCG-------CGCGC-UUGAAgaGCG- -5'
24819 5' -55 NC_005284.1 + 46802 1.13 0.000629
Target:  5'- cGUCACUCGCGCGCGCGAACUUCUCGCg -3'
miRNA:   3'- -CAGUGAGCGCGCGCGCUUGAAGAGCG- -5'
24819 5' -55 NC_005284.1 + 54668 0.66 0.732251
Target:  5'- cUUAUUCaGCGCGCGUuuaccgGGAUUUCcCGCa -3'
miRNA:   3'- cAGUGAG-CGCGCGCG------CUUGAAGaGCG- -5'
24819 5' -55 NC_005284.1 + 53161 0.66 0.721663
Target:  5'- --aGCUUGCGCGCcaugucgagcGCGAGCacgcaaUCUUGCc -3'
miRNA:   3'- cagUGAGCGCGCG----------CGCUUGa-----AGAGCG- -5'
24819 5' -55 NC_005284.1 + 47950 0.66 0.710987
Target:  5'- aUCGaUCGCGCGCGCcAACUcggUGCg -3'
miRNA:   3'- cAGUgAGCGCGCGCGcUUGAagaGCG- -5'
24819 5' -55 NC_005284.1 + 10372 0.66 0.707769
Target:  5'- aGUCGCcaacgaggcaguaaUCGCGCGuCGaCGAACUcaUCGUu -3'
miRNA:   3'- -CAGUG--------------AGCGCGC-GC-GCUUGAagAGCG- -5'
24819 5' -55 NC_005284.1 + 9345 0.67 0.68833
Target:  5'- gGUCGCccgacaaUCGCGaCGcCGCGAAUaUCgUCGCc -3'
miRNA:   3'- -CAGUG-------AGCGC-GC-GCGCUUGaAG-AGCG- -5'
24819 5' -55 NC_005284.1 + 7490 0.68 0.642403
Target:  5'- uUCAgCUCGCGCGCguugaucacgcgGCGAcgGCcgucgaucacgaggUUCUCGCc -3'
miRNA:   3'- cAGU-GAGCGCGCG------------CGCU--UG--------------AAGAGCG- -5'
24819 5' -55 NC_005284.1 + 44193 0.67 0.667623
Target:  5'- aUCAgUCGCccgaucuCGCGCGA-UUUCUCGUc -3'
miRNA:   3'- cAGUgAGCGc------GCGCGCUuGAAGAGCG- -5'
24819 5' -55 NC_005284.1 + 48251 0.67 0.689415
Target:  5'- -aCugUCGCGCGCcUGAGCgccUUCGUc -3'
miRNA:   3'- caGugAGCGCGCGcGCUUGaa-GAGCG- -5'
24819 5' -55 NC_005284.1 + 47338 0.66 0.753114
Target:  5'- cGUCGCUCGCGaacgucguCGCGuCGAuuuCUUC-CGa -3'
miRNA:   3'- -CAGUGAGCGC--------GCGC-GCUu--GAAGaGCg -5'
24819 5' -55 NC_005284.1 + 33850 0.67 0.667623
Target:  5'- -aCGCagGCGUGCaGCGAGCUcgaucugcUCUCGa -3'
miRNA:   3'- caGUGagCGCGCG-CGCUUGA--------AGAGCg -5'
24819 5' -55 NC_005284.1 + 24373 0.66 0.753114
Target:  5'- cUCGCcgUCGCGCaCGCGGACga-UCGa -3'
miRNA:   3'- cAGUG--AGCGCGcGCGCUUGaagAGCg -5'
24819 5' -55 NC_005284.1 + 24627 0.67 0.700234
Target:  5'- cGUCACcUGUGCG-GCGAACUgaccgucuUCagUCGCg -3'
miRNA:   3'- -CAGUGaGCGCGCgCGCUUGA--------AG--AGCG- -5'
24819 5' -55 NC_005284.1 + 44873 0.68 0.645698
Target:  5'- -cCGCUgcUGCGCgaGCGCGAgcgacGCUUCggCGCg -3'
miRNA:   3'- caGUGA--GCGCG--CGCGCU-----UGAAGa-GCG- -5'
24819 5' -55 NC_005284.1 + 42978 0.68 0.612742
Target:  5'- -gCGCUCGCGCGCGaccuGCUccgcCUCGg -3'
miRNA:   3'- caGUGAGCGCGCGCgcu-UGAa---GAGCg -5'
24819 5' -55 NC_005284.1 + 8972 0.66 0.753114
Target:  5'- --uGCUCGaguGCGUGCGGACaccUUCGCc -3'
miRNA:   3'- cagUGAGCg--CGCGCGCUUGaa-GAGCG- -5'
24819 5' -55 NC_005284.1 + 6625 0.66 0.721663
Target:  5'- cGUCACUUcgccaGCGCGCGCcgGAAUgggCUCu- -3'
miRNA:   3'- -CAGUGAG-----CGCGCGCG--CUUGaa-GAGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.