miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24819 5' -55 NC_005284.1 + 54671 0.67 0.667623
Target:  5'- uGUCACgcggCGaagacgGCGCGCGAGCgg-UUGCg -3'
miRNA:   3'- -CAGUGa---GCg-----CGCGCGCUUGaagAGCG- -5'
24819 5' -55 NC_005284.1 + 54668 0.66 0.732251
Target:  5'- cUUAUUCaGCGCGCGUuuaccgGGAUUUCcCGCa -3'
miRNA:   3'- cAGUGAG-CGCGCGCG------CUUGAAGaGCG- -5'
24819 5' -55 NC_005284.1 + 53161 0.66 0.721663
Target:  5'- --aGCUUGCGCGCcaugucgagcGCGAGCacgcaaUCUUGCc -3'
miRNA:   3'- cagUGAGCGCGCG----------CGCUUGa-----AGAGCG- -5'
24819 5' -55 NC_005284.1 + 51661 0.74 0.321032
Target:  5'- aUCACgCGCGCGCGaCGAucaGC-UUUCGCg -3'
miRNA:   3'- cAGUGaGCGCGCGC-GCU---UGaAGAGCG- -5'
24819 5' -55 NC_005284.1 + 49366 0.69 0.558265
Target:  5'- gGUCGCagcuUCGCcgaGCGCGAGCUgg-CGCg -3'
miRNA:   3'- -CAGUG----AGCGcg-CGCGCUUGAagaGCG- -5'
24819 5' -55 NC_005284.1 + 48251 0.67 0.689415
Target:  5'- -aCugUCGCGCGCcUGAGCgccUUCGUc -3'
miRNA:   3'- caGugAGCGCGCGcGCUUGaa-GAGCG- -5'
24819 5' -55 NC_005284.1 + 47950 0.66 0.710987
Target:  5'- aUCGaUCGCGCGCGCcAACUcggUGCg -3'
miRNA:   3'- cAGUgAGCGCGCGCGcUUGAagaGCG- -5'
24819 5' -55 NC_005284.1 + 47716 0.7 0.515688
Target:  5'- -gCGCUCGCGUGCGCaGAagGCcgugCUCGg -3'
miRNA:   3'- caGUGAGCGCGCGCG-CU--UGaa--GAGCg -5'
24819 5' -55 NC_005284.1 + 47338 0.66 0.753114
Target:  5'- cGUCGCUCGCGaacgucguCGCGuCGAuuuCUUC-CGa -3'
miRNA:   3'- -CAGUGAGCGC--------GCGC-GCUu--GAAGaGCg -5'
24819 5' -55 NC_005284.1 + 47291 0.67 0.667623
Target:  5'- cGUCGC-CGCgugaucaacGCGCGCGAGCUgaacCGUc -3'
miRNA:   3'- -CAGUGaGCG---------CGCGCGCUUGAaga-GCG- -5'
24819 5' -55 NC_005284.1 + 46907 0.73 0.337025
Target:  5'- cGUCgGCUCGCGCacUGCGAuCUUUUCGCc -3'
miRNA:   3'- -CAG-UGAGCGCGc-GCGCUuGAAGAGCG- -5'
24819 5' -55 NC_005284.1 + 46802 1.13 0.000629
Target:  5'- cGUCACUCGCGCGCGCGAACUUCUCGCg -3'
miRNA:   3'- -CAGUGAGCGCGCGCGCUUGAAGAGCG- -5'
24819 5' -55 NC_005284.1 + 45131 0.68 0.612742
Target:  5'- aUCGCUCGCauGCcCGCGAGCUcggcCUgCGCu -3'
miRNA:   3'- cAGUGAGCG--CGcGCGCUUGAa---GA-GCG- -5'
24819 5' -55 NC_005284.1 + 44898 0.74 0.298121
Target:  5'- cGUCGCUCacaacauccggGCGgGUGCGAAUcaCUCGCa -3'
miRNA:   3'- -CAGUGAG-----------CGCgCGCGCUUGaaGAGCG- -5'
24819 5' -55 NC_005284.1 + 44873 0.68 0.645698
Target:  5'- -cCGCUgcUGCGCgaGCGCGAgcgacGCUUCggCGCg -3'
miRNA:   3'- caGUGA--GCGCG--CGCGCU-----UGAAGa-GCG- -5'
24819 5' -55 NC_005284.1 + 44714 0.69 0.558265
Target:  5'- gGUCGCggUCGC-CGCGCGuuccgCUCGCu -3'
miRNA:   3'- -CAGUG--AGCGcGCGCGCuugaaGAGCG- -5'
24819 5' -55 NC_005284.1 + 44193 0.67 0.667623
Target:  5'- aUCAgUCGCccgaucuCGCGCGA-UUUCUCGUc -3'
miRNA:   3'- cAGUgAGCGc------GCGCGCUuGAAGAGCG- -5'
24819 5' -55 NC_005284.1 + 42978 0.68 0.612742
Target:  5'- -gCGCUCGCGCGCGaccuGCUccgcCUCGg -3'
miRNA:   3'- caGUGAGCGCGCGCgcu-UGAa---GAGCg -5'
24819 5' -55 NC_005284.1 + 41035 0.66 0.732251
Target:  5'- uUCACgcauacUGCGCGC-CGAcguUUCUCGCg -3'
miRNA:   3'- cAGUGa-----GCGCGCGcGCUug-AAGAGCG- -5'
24819 5' -55 NC_005284.1 + 40159 0.69 0.547514
Target:  5'- uUCACggcgUCGagguaGCGCGCGAGCgUUCggCGCc -3'
miRNA:   3'- cAGUG----AGCg----CGCGCGCUUG-AAGa-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.