miRNA display CGI

Results 61 - 67 of 67 are showing below:
Show page: 1 2 3 4

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
24819	5'	-55	NC_005284.1	+	15726	0.72	0.415968
	Target:  5'- cGUCugUCGaCGCGCGCGGugUggg-GCg -3' miRNA:   3'- -CAGugAGC-GCGCGCGCUugAagagCG- -5'
24819	5'	-55	NC_005284.1	+	46907	0.73	0.337025
	Target:  5'- cGUCgGCUCGCGCacUGCGAuCUUUUCGCc -3' miRNA:   3'- -CAG-UGAGCGCGc-GCGCUuGAAGAGCG- -5'
24819	5'	-55	NC_005284.1	+	51661	0.74	0.321032
	Target:  5'- aUCACgCGCGCGCGaCGAucaGC-UUUCGCg -3' miRNA:   3'- cAGUGaGCGCGCGC-GCU---UGaAGAGCG- -5'
24819	5'	-55	NC_005284.1	+	16200	0.74	0.298121
	Target:  5'- cUCGC-CGCGUGCGCucggccGAACggccgUCUCGCu -3' miRNA:   3'- cAGUGaGCGCGCGCG------CUUGa----AGAGCG- -5'
24819	5'	-55	NC_005284.1	+	44898	0.74	0.298121
	Target:  5'- cGUCGCUCacaacauccggGCGgGUGCGAAUcaCUCGCa -3' miRNA:   3'- -CAGUGAG-----------CGCgCGCGCUUGaaGAGCG- -5'
24819	5'	-55	NC_005284.1	+	35458	0.74	0.29077
	Target:  5'- cGUCGCgcuggaucUCGCGCgGUGCGAGCagcuuugCUCGCa -3' miRNA:   3'- -CAGUG--------AGCGCG-CGCGCUUGaa-----GAGCG- -5'
24819	5'	-55	NC_005284.1	+	46802	1.13	0.000629
	Target:  5'- cGUCACUCGCGCGCGCGAACUUCUCGCg -3' miRNA:   3'- -CAGUGAGCGCGCGCGCUUGAAGAGCG- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home