Results 41 - 60 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24819 | 5' | -55 | NC_005284.1 | + | 30411 | 0.68 | 0.612742 |
Target: 5'- uGUCGaucgucCGCGUGCGCGAcggcgagguGCUgUUUCGCg -3' miRNA: 3'- -CAGUga----GCGCGCGCGCU---------UGA-AGAGCG- -5' |
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24819 | 5' | -55 | NC_005284.1 | + | 11389 | 0.68 | 0.611644 |
Target: 5'- aUUugUCGCGCcucgacaGCGCGgGACUUgaCGCg -3' miRNA: 3'- cAGugAGCGCG-------CGCGC-UUGAAgaGCG- -5' |
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24819 | 5' | -55 | NC_005284.1 | + | 8705 | 0.68 | 0.601778 |
Target: 5'- gGUCACggUGCGCGCGCucGACgcggCGCg -3' miRNA: 3'- -CAGUGa-GCGCGCGCGc-UUGaagaGCG- -5' |
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24819 | 5' | -55 | NC_005284.1 | + | 49366 | 0.69 | 0.558265 |
Target: 5'- gGUCGCagcuUCGCcgaGCGCGAGCUgg-CGCg -3' miRNA: 3'- -CAGUG----AGCGcg-CGCGCUUGAagaGCG- -5' |
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24819 | 5' | -55 | NC_005284.1 | + | 4674 | 0.69 | 0.558265 |
Target: 5'- -aCGC-CGCGUGCGCGAucgccgcguuACgUUCUCGa -3' miRNA: 3'- caGUGaGCGCGCGCGCU----------UG-AAGAGCg -5' |
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24819 | 5' | -55 | NC_005284.1 | + | 33171 | 0.69 | 0.558265 |
Target: 5'- cGUCGagCGCgGCGCGCGAGa-UCUUGCc -3' miRNA: 3'- -CAGUgaGCG-CGCGCGCUUgaAGAGCG- -5' |
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24819 | 5' | -55 | NC_005284.1 | + | 44714 | 0.69 | 0.558265 |
Target: 5'- gGUCGCggUCGC-CGCGCGuuccgCUCGCu -3' miRNA: 3'- -CAGUG--AGCGcGCGCGCuugaaGAGCG- -5' |
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24819 | 5' | -55 | NC_005284.1 | + | 7991 | 0.69 | 0.558265 |
Target: 5'- ---gUUCGCGCGCGCGAgugACgacgCGCa -3' miRNA: 3'- caguGAGCGCGCGCGCU---UGaagaGCG- -5' |
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24819 | 5' | -55 | NC_005284.1 | + | 40159 | 0.69 | 0.547514 |
Target: 5'- uUCACggcgUCGagguaGCGCGCGAGCgUUCggCGCc -3' miRNA: 3'- cAGUG----AGCg----CGCGCGCUUG-AAGa-GCG- -5' |
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24819 | 5' | -55 | NC_005284.1 | + | 39693 | 0.69 | 0.546443 |
Target: 5'- -gCACUCGCGCGgauacucUGCGAGCgcgugCGCc -3' miRNA: 3'- caGUGAGCGCGC-------GCGCUUGaaga-GCG- -5' |
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24819 | 5' | -55 | NC_005284.1 | + | 17035 | 0.7 | 0.526219 |
Target: 5'- -cCGCUUGcCGCGCGCGGGauuuccUCUCGg -3' miRNA: 3'- caGUGAGC-GCGCGCGCUUga----AGAGCg -5' |
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24819 | 5' | -55 | NC_005284.1 | + | 1293 | 0.7 | 0.515688 |
Target: 5'- --aGCccCGCGCG-GCGAaccggcgggGCUUCUCGCa -3' miRNA: 3'- cagUGa-GCGCGCgCGCU---------UGAAGAGCG- -5' |
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24819 | 5' | -55 | NC_005284.1 | + | 47716 | 0.7 | 0.515688 |
Target: 5'- -gCGCUCGCGUGCGCaGAagGCcgugCUCGg -3' miRNA: 3'- caGUGAGCGCGCGCG-CU--UGaa--GAGCg -5' |
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24819 | 5' | -55 | NC_005284.1 | + | 12826 | 0.7 | 0.494889 |
Target: 5'- -cCGCuUCGCGCcCGCGGACUcUUCGUc -3' miRNA: 3'- caGUG-AGCGCGcGCGCUUGAaGAGCG- -5' |
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24819 | 5' | -55 | NC_005284.1 | + | 7250 | 0.71 | 0.464436 |
Target: 5'- uUgGCUCGcCGCGUGCGGGCUUUUUc- -3' miRNA: 3'- cAgUGAGC-GCGCGCGCUUGAAGAGcg -5' |
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24819 | 5' | -55 | NC_005284.1 | + | 17333 | 0.71 | 0.464436 |
Target: 5'- aUC-CUCGCGC-CGaCGAugUUcCUCGCg -3' miRNA: 3'- cAGuGAGCGCGcGC-GCUugAA-GAGCG- -5' |
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24819 | 5' | -55 | NC_005284.1 | + | 11819 | 0.71 | 0.464436 |
Target: 5'- gGUCGCgCGCGaGCGCGGcuaucucgagcaGCggCUCGCg -3' miRNA: 3'- -CAGUGaGCGCgCGCGCU------------UGaaGAGCG- -5' |
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24819 | 5' | -55 | NC_005284.1 | + | 112 | 0.71 | 0.454503 |
Target: 5'- -cCGCUCGCGCGC-CGu-CUUCgcCGCg -3' miRNA: 3'- caGUGAGCGCGCGcGCuuGAAGa-GCG- -5' |
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24819 | 5' | -55 | NC_005284.1 | + | 9915 | 0.71 | 0.444686 |
Target: 5'- cGUCGCUCGCGCuCGCGcAGCagCggCGUa -3' miRNA: 3'- -CAGUGAGCGCGcGCGC-UUGaaGa-GCG- -5' |
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24819 | 5' | -55 | NC_005284.1 | + | 26997 | 0.71 | 0.424465 |
Target: 5'- -cCACUCGUccgaaaaGgGCGCGAccGgUUCUCGCa -3' miRNA: 3'- caGUGAGCG-------CgCGCGCU--UgAAGAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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