miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24819 5' -55 NC_005284.1 + 24627 0.67 0.700234
Target:  5'- cGUCACcUGUGCG-GCGAACUgaccgucuUCagUCGCg -3'
miRNA:   3'- -CAGUGaGCGCGCgCGCUUGA--------AG--AGCG- -5'
24819 5' -55 NC_005284.1 + 48251 0.67 0.689415
Target:  5'- -aCugUCGCGCGCcUGAGCgccUUCGUc -3'
miRNA:   3'- caGugAGCGCGCGcGCUUGaa-GAGCG- -5'
24819 5' -55 NC_005284.1 + 7695 0.67 0.689415
Target:  5'- -gUACagCGUGCGCGUGAGCggugCGCc -3'
miRNA:   3'- caGUGa-GCGCGCGCGCUUGaagaGCG- -5'
24819 5' -55 NC_005284.1 + 15093 0.67 0.689415
Target:  5'- -gCGCUCGCagaguaucCGCGCGAguGCUgcgggCUCGUc -3'
miRNA:   3'- caGUGAGCGc-------GCGCGCU--UGAa----GAGCG- -5'
24819 5' -55 NC_005284.1 + 9345 0.67 0.68833
Target:  5'- gGUCGCccgacaaUCGCGaCGcCGCGAAUaUCgUCGCc -3'
miRNA:   3'- -CAGUG-------AGCGC-GC-GCGCUUGaAG-AGCG- -5'
24819 5' -55 NC_005284.1 + 38084 0.67 0.678541
Target:  5'- uGUgGCUCGU-CGCGCGGACgaagaCGCg -3'
miRNA:   3'- -CAgUGAGCGcGCGCGCUUGaaga-GCG- -5'
24819 5' -55 NC_005284.1 + 33628 0.67 0.678541
Target:  5'- cGUUGCUCGagcCGCGCGCGGcaUUCaucaCGCg -3'
miRNA:   3'- -CAGUGAGC---GCGCGCGCUugAAGa---GCG- -5'
24819 5' -55 NC_005284.1 + 33850 0.67 0.667623
Target:  5'- -aCGCagGCGUGCaGCGAGCUcgaucugcUCUCGa -3'
miRNA:   3'- caGUGagCGCGCG-CGCUUGA--------AGAGCg -5'
24819 5' -55 NC_005284.1 + 54671 0.67 0.667623
Target:  5'- uGUCACgcggCGaagacgGCGCGCGAGCgg-UUGCg -3'
miRNA:   3'- -CAGUGa---GCg-----CGCGCGCUUGaagAGCG- -5'
24819 5' -55 NC_005284.1 + 44193 0.67 0.667623
Target:  5'- aUCAgUCGCccgaucuCGCGCGA-UUUCUCGUc -3'
miRNA:   3'- cAGUgAGCGc------GCGCGCUuGAAGAGCG- -5'
24819 5' -55 NC_005284.1 + 47291 0.67 0.667623
Target:  5'- cGUCGC-CGCgugaucaacGCGCGCGAGCUgaacCGUc -3'
miRNA:   3'- -CAGUGaGCG---------CGCGCGCUUGAaga-GCG- -5'
24819 5' -55 NC_005284.1 + 36094 0.68 0.650089
Target:  5'- cGUCcggUGCGgGCGCGAgcagcuccuucaucuGCUUCUCGa -3'
miRNA:   3'- -CAGugaGCGCgCGCGCU---------------UGAAGAGCg -5'
24819 5' -55 NC_005284.1 + 44873 0.68 0.645698
Target:  5'- -cCGCUgcUGCGCgaGCGCGAgcgacGCUUCggCGCg -3'
miRNA:   3'- caGUGA--GCGCG--CGCGCU-----UGAAGa-GCG- -5'
24819 5' -55 NC_005284.1 + 7490 0.68 0.642403
Target:  5'- uUCAgCUCGCGCGCguugaucacgcgGCGAcgGCcgucgaucacgaggUUCUCGCc -3'
miRNA:   3'- cAGU-GAGCGCGCG------------CGCU--UG--------------AAGAGCG- -5'
24819 5' -55 NC_005284.1 + 9438 0.68 0.634712
Target:  5'- uGUCGCUCGCGgcCGgGCGGAUUgC-CGUg -3'
miRNA:   3'- -CAGUGAGCGC--GCgCGCUUGAaGaGCG- -5'
24819 5' -55 NC_005284.1 + 9660 0.68 0.623723
Target:  5'- --aGCUCGCGgGCauGCGAGCgaugCGCg -3'
miRNA:   3'- cagUGAGCGCgCG--CGCUUGaagaGCG- -5'
24819 5' -55 NC_005284.1 + 39834 0.68 0.623723
Target:  5'- aUUGCaUGgGCGCGgcCGAugUUCUCGCu -3'
miRNA:   3'- cAGUGaGCgCGCGC--GCUugAAGAGCG- -5'
24819 5' -55 NC_005284.1 + 6486 0.68 0.617133
Target:  5'- --gGCUCGCcgaccuGCGUGCGGAUUUCgagaagcuugcgaaaUCGCa -3'
miRNA:   3'- cagUGAGCG------CGCGCGCUUGAAG---------------AGCG- -5'
24819 5' -55 NC_005284.1 + 45131 0.68 0.612742
Target:  5'- aUCGCUCGCauGCcCGCGAGCUcggcCUgCGCu -3'
miRNA:   3'- cAGUGAGCG--CGcGCGCUUGAa---GA-GCG- -5'
24819 5' -55 NC_005284.1 + 30411 0.68 0.612742
Target:  5'- uGUCGaucgucCGCGUGCGCGAcggcgagguGCUgUUUCGCg -3'
miRNA:   3'- -CAGUga----GCGCGCGCGCU---------UGA-AGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.