miRNA display CGI


Results 1 - 20 of 39 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24820 3' -54.2 NC_005284.1 + 34048 0.66 0.81392
Target:  5'- aGGAU--CGUCgcugGCUU-CGCGGCUCGGa -3'
miRNA:   3'- -CCUGcuGUAGa---CGAGcGUGUCGAGCC- -5'
24820 3' -54.2 NC_005284.1 + 5281 0.66 0.81392
Target:  5'- uGAUGcCGUCgUGCUCGCACuucguGUUgCGGu -3'
miRNA:   3'- cCUGCuGUAG-ACGAGCGUGu----CGA-GCC- -5'
24820 3' -54.2 NC_005284.1 + 16196 0.66 0.812985
Target:  5'- uGGGCGGCAUCgugcagaUGCUCaguccGCAacaGGC-CGGc -3'
miRNA:   3'- -CCUGCUGUAG-------ACGAG-----CGUg--UCGaGCC- -5'
24820 3' -54.2 NC_005284.1 + 12645 0.66 0.804486
Target:  5'- -uACGACG-CUGCgugugCGCAaagccCAGUUCGGc -3'
miRNA:   3'- ccUGCUGUaGACGa----GCGU-----GUCGAGCC- -5'
24820 3' -54.2 NC_005284.1 + 3457 0.66 0.804486
Target:  5'- --cCGAgcCAUUUGCgcuguuccUCGgACAGCUCGGg -3'
miRNA:   3'- ccuGCU--GUAGACG--------AGCgUGUCGAGCC- -5'
24820 3' -54.2 NC_005284.1 + 13592 0.66 0.794872
Target:  5'- gGGAagaaGACg---GCUgGC-CAGCUCGGg -3'
miRNA:   3'- -CCUg---CUGuagaCGAgCGuGUCGAGCC- -5'
24820 3' -54.2 NC_005284.1 + 32981 0.66 0.794872
Target:  5'- aGGGCGGCGgucaCUcGCUC-CGCAGCgggCGa -3'
miRNA:   3'- -CCUGCUGUa---GA-CGAGcGUGUCGa--GCc -5'
24820 3' -54.2 NC_005284.1 + 45151 0.66 0.794872
Target:  5'- aGGCGugGUCga--CGCACGGCgacgUCGGg -3'
miRNA:   3'- cCUGCugUAGacgaGCGUGUCG----AGCC- -5'
24820 3' -54.2 NC_005284.1 + 9415 0.66 0.78509
Target:  5'- cGACGGCAUCgugaaacucgGCgugUCGCucGCGGC-CGGg -3'
miRNA:   3'- cCUGCUGUAGa---------CG---AGCG--UGUCGaGCC- -5'
24820 3' -54.2 NC_005284.1 + 13101 0.66 0.78509
Target:  5'- cGGACGAUAUCgGaaa--GCGGUUCGGg -3'
miRNA:   3'- -CCUGCUGUAGaCgagcgUGUCGAGCC- -5'
24820 3' -54.2 NC_005284.1 + 38744 0.66 0.775149
Target:  5'- cGGACGGCAUgaGCUCGauu-GCgUCGa -3'
miRNA:   3'- -CCUGCUGUAgaCGAGCguguCG-AGCc -5'
24820 3' -54.2 NC_005284.1 + 45459 0.66 0.775149
Target:  5'- cGGGCGACcagUUGCUCGCggcaaugacaACGGuCUCa- -3'
miRNA:   3'- -CCUGCUGua-GACGAGCG----------UGUC-GAGcc -5'
24820 3' -54.2 NC_005284.1 + 48960 0.66 0.765061
Target:  5'- cGGACuGCAUCgacgaagcggUGCU-GCGCGGCUggaCGGg -3'
miRNA:   3'- -CCUGcUGUAG----------ACGAgCGUGUCGA---GCC- -5'
24820 3' -54.2 NC_005284.1 + 33968 0.66 0.765061
Target:  5'- cGGcCGGCG-CUGCUgCGgGCuGCUCGa -3'
miRNA:   3'- -CCuGCUGUaGACGA-GCgUGuCGAGCc -5'
24820 3' -54.2 NC_005284.1 + 23030 0.66 0.764044
Target:  5'- uGACGACAagcUCUGCgcagaGCGCuaucgcuGGCUgCGGg -3'
miRNA:   3'- cCUGCUGU---AGACGag---CGUG-------UCGA-GCC- -5'
24820 3' -54.2 NC_005284.1 + 44762 0.67 0.754836
Target:  5'- -cGCGACAUCacgcucgGCUUGCGCAagGCcgCGGu -3'
miRNA:   3'- ccUGCUGUAGa------CGAGCGUGU--CGa-GCC- -5'
24820 3' -54.2 NC_005284.1 + 45848 0.67 0.754836
Target:  5'- -uGCGACGcgUUGUUUGCgauccgcugauACAGCUCGGc -3'
miRNA:   3'- ccUGCUGUa-GACGAGCG-----------UGUCGAGCC- -5'
24820 3' -54.2 NC_005284.1 + 13377 0.67 0.754836
Target:  5'- uGGGCGGCgAUCUGUcUGCgGCGGUUCa- -3'
miRNA:   3'- -CCUGCUG-UAGACGaGCG-UGUCGAGcc -5'
24820 3' -54.2 NC_005284.1 + 46897 0.67 0.744488
Target:  5'- cGGucgcCGACGUCgGCUCGCGCA-CUgCGa -3'
miRNA:   3'- -CCu---GCUGUAGaCGAGCGUGUcGA-GCc -5'
24820 3' -54.2 NC_005284.1 + 31431 0.67 0.744488
Target:  5'- cGGGCGACGUgcGC-CGCuGCGGCgcgcCGGg -3'
miRNA:   3'- -CCUGCUGUAgaCGaGCG-UGUCGa---GCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.