miRNA display CGI


Results 61 - 80 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24820 5' -60.4 NC_005284.1 + 41610 0.7 0.246869
Target:  5'- gGCCGcGCCG-AGUGCGAGCuccgacacGCAUCg -3'
miRNA:   3'- aCGGCuCGGCgUCGCGCUCGc-------UGUAG- -5'
24820 5' -60.4 NC_005284.1 + 16104 0.7 0.246869
Target:  5'- cGCCGcacucguuGCCGuUGGCGCGguGGCGACGUUc -3'
miRNA:   3'- aCGGCu-------CGGC-GUCGCGC--UCGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 8759 0.7 0.240698
Target:  5'- aGCC--GCCGCAGCgGCGuucGGCGuGCAUCa -3'
miRNA:   3'- aCGGcuCGGCGUCG-CGC---UCGC-UGUAG- -5'
24820 5' -60.4 NC_005284.1 + 14479 0.7 0.240698
Target:  5'- gGCCGAuacagGCCGCgGGCuuCGAGCaGACAUCc -3'
miRNA:   3'- aCGGCU-----CGGCG-UCGc-GCUCG-CUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 8272 0.7 0.222953
Target:  5'- gGCCGAGCU---GUGCGAGCaGAUGUCg -3'
miRNA:   3'- aCGGCUCGGcguCGCGCUCG-CUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 7065 0.71 0.21729
Target:  5'- cGCCGAGCacggccuucugCGCA-CGCGAGCGcGCGUg -3'
miRNA:   3'- aCGGCUCG-----------GCGUcGCGCUCGC-UGUAg -5'
24820 5' -60.4 NC_005284.1 + 27993 0.71 0.21729
Target:  5'- cGCgCGAuGuuGCAGCucuaucccGCGGGCGACAUg -3'
miRNA:   3'- aCG-GCU-CggCGUCG--------CGCUCGCUGUAg -5'
24820 5' -60.4 NC_005284.1 + 41962 0.71 0.21175
Target:  5'- cGaaGAGuCCGCgGGCGCGAagcgGCGGCGUCc -3'
miRNA:   3'- aCggCUC-GGCG-UCGCGCU----CGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 23574 0.71 0.21175
Target:  5'- aUGCC-AGCCGgAGCGgguCGAGCGGuuCAUCg -3'
miRNA:   3'- -ACGGcUCGGCgUCGC---GCUCGCU--GUAG- -5'
24820 5' -60.4 NC_005284.1 + 45134 0.71 0.206333
Target:  5'- cGUCGAGCUGaugggcaaGGCGUGgucgacgcacGGCGACGUCg -3'
miRNA:   3'- aCGGCUCGGCg-------UCGCGC----------UCGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 47288 0.71 0.206333
Target:  5'- gGCCGucGCCGCGugaucaacgcGCGCGAGCuGAacCGUCa -3'
miRNA:   3'- aCGGCu-CGGCGU----------CGCGCUCG-CU--GUAG- -5'
24820 5' -60.4 NC_005284.1 + 23298 0.71 0.205798
Target:  5'- aUGCCGAGgCGCGcaauGCGCGcuuuuccGGCGGCAc- -3'
miRNA:   3'- -ACGGCUCgGCGU----CGCGC-------UCGCUGUag -5'
24820 5' -60.4 NC_005284.1 + 45901 0.71 0.201036
Target:  5'- uUGCCGuGGUCGC-GCGCGAuGCGcagcACGUCg -3'
miRNA:   3'- -ACGGC-UCGGCGuCGCGCU-CGC----UGUAG- -5'
24820 5' -60.4 NC_005284.1 + 29736 0.71 0.190796
Target:  5'- cGUCGGGgCGCcgaacagcaccGGCGCGAGCGggauacGCAUCu -3'
miRNA:   3'- aCGGCUCgGCG-----------UCGCGCUCGC------UGUAG- -5'
24820 5' -60.4 NC_005284.1 + 45413 0.72 0.185849
Target:  5'- gUGUCGcAGUCGCGGCcgGCGAcgauauucGCGGCGUCg -3'
miRNA:   3'- -ACGGC-UCGGCGUCG--CGCU--------CGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 6590 0.72 0.185361
Target:  5'- cGCguGGCCGCuGCGCGAGCugucaccgcaacgGGCGUCa -3'
miRNA:   3'- aCGgcUCGGCGuCGCGCUCG-------------CUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 33630 0.72 0.181016
Target:  5'- uUGCuCGAGCCGC-GCGCG-GCauuCAUCa -3'
miRNA:   3'- -ACG-GCUCGGCGuCGCGCuCGcu-GUAG- -5'
24820 5' -60.4 NC_005284.1 + 10999 0.73 0.141941
Target:  5'- uUGCCGAcaaggaugcgaaaGCCGCAGCGgGGGCaagaaccaACAUCg -3'
miRNA:   3'- -ACGGCU-------------CGGCGUCGCgCUCGc-------UGUAG- -5'
24820 5' -60.4 NC_005284.1 + 9216 0.73 0.138527
Target:  5'- cGUCGAuaGCCGaguGCGCGGGCGACGc- -3'
miRNA:   3'- aCGGCU--CGGCgu-CGCGCUCGCUGUag -5'
24820 5' -60.4 NC_005284.1 + 4636 0.74 0.134821
Target:  5'- gGUCG-GCaGCGGCGUGAGCGGCAg- -3'
miRNA:   3'- aCGGCuCGgCGUCGCGCUCGCUGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.