miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24820 5' -60.4 NC_005284.1 + 42646 0.68 0.330588
Target:  5'- aGCCGcgcuuGCCGCaccaccgAGCGCGccgaCGGCAUCa -3'
miRNA:   3'- aCGGCu----CGGCG-------UCGCGCuc--GCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 16670 0.68 0.323581
Target:  5'- -uCCG-GCCGUcgAGCGUGAGgcCGGCGUCg -3'
miRNA:   3'- acGGCuCGGCG--UCGCGCUC--GCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 15286 0.68 0.323581
Target:  5'- aGCCGAccgacgagGaCCGCacgaugugcgGGCGC-AGCGGCAUCg -3'
miRNA:   3'- aCGGCU--------C-GGCG----------UCGCGcUCGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 11804 0.68 0.323581
Target:  5'- gGCCGAggcggagcagGUCGC-GCGCGAGCGcgGCuAUCu -3'
miRNA:   3'- aCGGCU----------CGGCGuCGCGCUCGC--UG-UAG- -5'
24820 5' -60.4 NC_005284.1 + 9134 0.68 0.322809
Target:  5'- uUGCCGGGUguCGCGGaugcuauCGCGcGCGGCAUg -3'
miRNA:   3'- -ACGGCUCG--GCGUC-------GCGCuCGCUGUAg -5'
24820 5' -60.4 NC_005284.1 + 20737 0.68 0.315926
Target:  5'- -uCCGAGCCGCGaaGCcAGCGACgAUCc -3'
miRNA:   3'- acGGCUCGGCGUcgCGcUCGCUG-UAG- -5'
24820 5' -60.4 NC_005284.1 + 22130 0.68 0.315926
Target:  5'- cGCCGAugcgggagagGCgGCAGCGUG-GCGcUAUCg -3'
miRNA:   3'- aCGGCU----------CGgCGUCGCGCuCGCuGUAG- -5'
24820 5' -60.4 NC_005284.1 + 33171 0.68 0.308408
Target:  5'- cGUCGAG-CGCGGCGC--GCGAgAUCu -3'
miRNA:   3'- aCGGCUCgGCGUCGCGcuCGCUgUAG- -5'
24820 5' -60.4 NC_005284.1 + 3309 0.68 0.308408
Target:  5'- cUGUugCGAGCCGaUAGUGCaggccGAGCGGCGUUc -3'
miRNA:   3'- -ACG--GCUCGGC-GUCGCG-----CUCGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 11968 0.69 0.293784
Target:  5'- aUGCCGAGgUGCAcucGUGuCGuucGCGGCGUCg -3'
miRNA:   3'- -ACGGCUCgGCGU---CGC-GCu--CGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 21558 0.69 0.293067
Target:  5'- uUGCCGAcgagcagGCCGCGcgggcguucgacGCGC-AGCGGCAUg -3'
miRNA:   3'- -ACGGCU-------CGGCGU------------CGCGcUCGCUGUAg -5'
24820 5' -60.4 NC_005284.1 + 22747 0.69 0.293067
Target:  5'- gGCCGAGCgGCugcggucgaucaaGGgGCGcGCGAuCGUCa -3'
miRNA:   3'- aCGGCUCGgCG-------------UCgCGCuCGCU-GUAG- -5'
24820 5' -60.4 NC_005284.1 + 44631 0.69 0.285975
Target:  5'- -aCCGAGCgcaucaucgugccCGUAcGCGCGAGCGcCGUCu -3'
miRNA:   3'- acGGCUCG-------------GCGU-CGCGCUCGCuGUAG- -5'
24820 5' -60.4 NC_005284.1 + 46575 0.69 0.279707
Target:  5'- uUGCCGAGCaugGCGGCGC-AGUGgGCAa- -3'
miRNA:   3'- -ACGGCUCGg--CGUCGCGcUCGC-UGUag -5'
24820 5' -60.4 NC_005284.1 + 44907 0.69 0.272872
Target:  5'- cGCUGAGCUccugcuguGCGGCugccgucucGCGAGCGAUgAUCg -3'
miRNA:   3'- aCGGCUCGG--------CGUCG---------CGCUCGCUG-UAG- -5'
24820 5' -60.4 NC_005284.1 + 45628 0.69 0.266172
Target:  5'- cGCCGAacucuugcccauGCCGC-GCGCGAuagcauccGCGACAc- -3'
miRNA:   3'- aCGGCU------------CGGCGuCGCGCU--------CGCUGUag -5'
24820 5' -60.4 NC_005284.1 + 17878 0.69 0.266172
Target:  5'- gGCCG-GCCGcCGGaucgGCGGGCG-CAUCc -3'
miRNA:   3'- aCGGCuCGGC-GUCg---CGCUCGCuGUAG- -5'
24820 5' -60.4 NC_005284.1 + 19198 0.69 0.259605
Target:  5'- cUGCCuGAGucuCCGCAGCGCGA-CGAgGUa -3'
miRNA:   3'- -ACGG-CUC---GGCGUCGCGCUcGCUgUAg -5'
24820 5' -60.4 NC_005284.1 + 20815 0.7 0.249374
Target:  5'- cUGUCGAGCagccCGCAGCagcgccggccgacgaGCGGGCGGCGc- -3'
miRNA:   3'- -ACGGCUCG----GCGUCG---------------CGCUCGCUGUag -5'
24820 5' -60.4 NC_005284.1 + 16104 0.7 0.246869
Target:  5'- cGCCGcacucguuGCCGuUGGCGCGguGGCGACGUUc -3'
miRNA:   3'- aCGGCu-------CGGC-GUCGCGC--UCGCUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.