miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24820 5' -60.4 NC_005284.1 + 36304 0.67 0.389725
Target:  5'- cGCCGAGCgCGUucucGGCGCGcacccgcGCGAgGUa -3'
miRNA:   3'- aCGGCUCG-GCG----UCGCGCu------CGCUgUAg -5'
24820 5' -60.4 NC_005284.1 + 10005 0.67 0.389725
Target:  5'- gGCCGAGacggaCCGCGGCcuugcgcaaGcCGAGCGugAUg -3'
miRNA:   3'- aCGGCUC-----GGCGUCG---------C-GCUCGCugUAg -5'
24820 5' -60.4 NC_005284.1 + 49372 0.67 0.389725
Target:  5'- aGCUucGCCG-AGCGCGAGCuGGCGc- -3'
miRNA:   3'- aCGGcuCGGCgUCGCGCUCG-CUGUag -5'
24820 5' -60.4 NC_005284.1 + 21321 0.67 0.389725
Target:  5'- cGCCG-GCCGaCGGCGCGuguaagcacuGCGG-AUCg -3'
miRNA:   3'- aCGGCuCGGC-GUCGCGCu---------CGCUgUAG- -5'
24820 5' -60.4 NC_005284.1 + 53378 0.67 0.380988
Target:  5'- cUGCU-AGCUGU-GCGCGgaugccAGCGACGUCg -3'
miRNA:   3'- -ACGGcUCGGCGuCGCGC------UCGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 14049 0.67 0.380988
Target:  5'- aGCgGGGCgGCAG-GCuGGCGuCAUCg -3'
miRNA:   3'- aCGgCUCGgCGUCgCGcUCGCuGUAG- -5'
24820 5' -60.4 NC_005284.1 + 31474 0.67 0.380988
Target:  5'- cGCCGuGCCGCcggaaaAGCGCGcauuGCGcGCcUCg -3'
miRNA:   3'- aCGGCuCGGCG------UCGCGCu---CGC-UGuAG- -5'
24820 5' -60.4 NC_005284.1 + 20962 0.67 0.372382
Target:  5'- aGUCGAGgCGCAacucuccugcGUGCGGGCGAUu-- -3'
miRNA:   3'- aCGGCUCgGCGU----------CGCGCUCGCUGuag -5'
24820 5' -60.4 NC_005284.1 + 41373 0.67 0.372382
Target:  5'- cGCCGAGacacgcCCGCGGUcacgauguuucGCGAGUGGCu-- -3'
miRNA:   3'- aCGGCUC------GGCGUCG-----------CGCUCGCUGuag -5'
24820 5' -60.4 NC_005284.1 + 33498 0.67 0.36391
Target:  5'- cGCCGuugugcuGCCGCAGUagGCGcGCGGCc-- -3'
miRNA:   3'- aCGGCu------CGGCGUCG--CGCuCGCUGuag -5'
24820 5' -60.4 NC_005284.1 + 9232 0.67 0.36391
Target:  5'- cGUCGAGgCGCugacGCGCGcggcgGGCGGCAc- -3'
miRNA:   3'- aCGGCUCgGCGu---CGCGC-----UCGCUGUag -5'
24820 5' -60.4 NC_005284.1 + 37446 0.67 0.354745
Target:  5'- aGCCG-GCCGCgaggaacaucgucGGCGCGAG-GAUcagaAUCa -3'
miRNA:   3'- aCGGCuCGGCG-------------UCGCGCUCgCUG----UAG- -5'
24820 5' -60.4 NC_005284.1 + 46504 0.67 0.347369
Target:  5'- gGCCGAcGCCGCacgggacggauGGUGCGaAGgGAgGUCc -3'
miRNA:   3'- aCGGCU-CGGCG-----------UCGCGC-UCgCUgUAG- -5'
24820 5' -60.4 NC_005284.1 + 38976 0.67 0.347369
Target:  5'- aUGCUGAuCCGCGggcuGCGCGcuGGCGACGc- -3'
miRNA:   3'- -ACGGCUcGGCGU----CGCGC--UCGCUGUag -5'
24820 5' -60.4 NC_005284.1 + 21801 0.67 0.347369
Target:  5'- cGCCc-GCUGCGGaGCGAGUGACcgCc -3'
miRNA:   3'- aCGGcuCGGCGUCgCGCUCGCUGuaG- -5'
24820 5' -60.4 NC_005284.1 + 21408 0.67 0.347369
Target:  5'- aUGgCGAGCCgucgGCAGCGCcGGcCGACGa- -3'
miRNA:   3'- -ACgGCUCGG----CGUCGCGcUC-GCUGUag -5'
24820 5' -60.4 NC_005284.1 + 39430 0.68 0.331373
Target:  5'- aUGCCGAucgagccaucgGCCuGCAcGC-CGAGCGACAcgaUCa -3'
miRNA:   3'- -ACGGCU-----------CGG-CGU-CGcGCUCGCUGU---AG- -5'
24820 5' -60.4 NC_005284.1 + 33127 0.68 0.331373
Target:  5'- cGCCGAcGCgGCGGCaucguGCGcGGCGAUcgCa -3'
miRNA:   3'- aCGGCU-CGgCGUCG-----CGC-UCGCUGuaG- -5'
24820 5' -60.4 NC_005284.1 + 43536 0.68 0.331373
Target:  5'- cGCgCGAGCCGCuGcCGCGuuGGuCGACAc- -3'
miRNA:   3'- aCG-GCUCGGCGuC-GCGC--UC-GCUGUag -5'
24820 5' -60.4 NC_005284.1 + 7983 0.68 0.331373
Target:  5'- -uCCGAGaaguuCGCGcGCGCGAGUGACGa- -3'
miRNA:   3'- acGGCUCg----GCGU-CGCGCUCGCUGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.