miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24820 5' -60.4 NC_005284.1 + 10999 0.73 0.141941
Target:  5'- uUGCCGAcaaggaugcgaaaGCCGCAGCGgGGGCaagaaccaACAUCg -3'
miRNA:   3'- -ACGGCU-------------CGGCGUCGCgCUCGc-------UGUAG- -5'
24820 5' -60.4 NC_005284.1 + 11609 0.77 0.075215
Target:  5'- gGCCGAGCgucagcgugacgUGCAGCGCGAacucgggGCGAUGUCg -3'
miRNA:   3'- aCGGCUCG------------GCGUCGCGCU-------CGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 11804 0.68 0.323581
Target:  5'- gGCCGAggcggagcagGUCGC-GCGCGAGCGcgGCuAUCu -3'
miRNA:   3'- aCGGCU----------CGGCGuCGCGCUCGC--UG-UAG- -5'
24820 5' -60.4 NC_005284.1 + 11968 0.69 0.293784
Target:  5'- aUGCCGAGgUGCAcucGUGuCGuucGCGGCGUCg -3'
miRNA:   3'- -ACGGCUCgGCGU---CGC-GCu--CGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 12040 0.66 0.435322
Target:  5'- cGCCGAccucgcGCgGUuuucGGCGCGugcGGCGAUGUCu -3'
miRNA:   3'- aCGGCU------CGgCG----UCGCGC---UCGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 14049 0.67 0.380988
Target:  5'- aGCgGGGCgGCAG-GCuGGCGuCAUCg -3'
miRNA:   3'- aCGgCUCGgCGUCgCGcUCGCuGUAG- -5'
24820 5' -60.4 NC_005284.1 + 14479 0.7 0.240698
Target:  5'- gGCCGAuacagGCCGCgGGCuuCGAGCaGACAUCc -3'
miRNA:   3'- aCGGCU-----CGGCG-UCGc-GCUCG-CUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 14530 0.83 0.02782
Target:  5'- cGCCGAcGCUGCGG-GUGGGCGACAUCa -3'
miRNA:   3'- aCGGCU-CGGCGUCgCGCUCGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 15286 0.68 0.323581
Target:  5'- aGCCGAccgacgagGaCCGCacgaugugcgGGCGC-AGCGGCAUCg -3'
miRNA:   3'- aCGGCU--------C-GGCG----------UCGCGcUCGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 16104 0.7 0.246869
Target:  5'- cGCCGcacucguuGCCGuUGGCGCGguGGCGACGUUc -3'
miRNA:   3'- aCGGCu-------CGGC-GUCGCGC--UCGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 16175 0.7 0.246869
Target:  5'- gGCUcGGCgCGUcgauGGCGCuGGGCGGCAUCg -3'
miRNA:   3'- aCGGcUCG-GCG----UCGCG-CUCGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 16670 0.68 0.323581
Target:  5'- -uCCG-GCCGUcgAGCGUGAGgcCGGCGUCg -3'
miRNA:   3'- acGGCuCGGCG--UCGCGCUC--GCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 16881 0.66 0.435322
Target:  5'- gUGCUG-GCCGguGCGUucgacggcaaGA-CGACGUCg -3'
miRNA:   3'- -ACGGCuCGGCguCGCG----------CUcGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 17878 0.69 0.266172
Target:  5'- gGCCG-GCCGcCGGaucgGCGGGCG-CAUCc -3'
miRNA:   3'- aCGGCuCGGC-GUCg---CGCUCGCuGUAG- -5'
24820 5' -60.4 NC_005284.1 + 19198 0.69 0.259605
Target:  5'- cUGCCuGAGucuCCGCAGCGCGA-CGAgGUa -3'
miRNA:   3'- -ACGG-CUC---GGCGUCGCGCUcGCUgUAg -5'
24820 5' -60.4 NC_005284.1 + 20737 0.68 0.315926
Target:  5'- -uCCGAGCCGCGaaGCcAGCGACgAUCc -3'
miRNA:   3'- acGGCUCGGCGUcgCGcUCGCUG-UAG- -5'
24820 5' -60.4 NC_005284.1 + 20815 0.7 0.249374
Target:  5'- cUGUCGAGCagccCGCAGCagcgccggccgacgaGCGGGCGGCGc- -3'
miRNA:   3'- -ACGGCUCG----GCGUCG---------------CGCUCGCUGUag -5'
24820 5' -60.4 NC_005284.1 + 20962 0.67 0.372382
Target:  5'- aGUCGAGgCGCAacucuccugcGUGCGGGCGAUu-- -3'
miRNA:   3'- aCGGCUCgGCGU----------CGCGCUCGCUGuag -5'
24820 5' -60.4 NC_005284.1 + 21321 0.67 0.389725
Target:  5'- cGCCG-GCCGaCGGCGCGuguaagcacuGCGG-AUCg -3'
miRNA:   3'- aCGGCuCGGC-GUCGCGCu---------CGCUgUAG- -5'
24820 5' -60.4 NC_005284.1 + 21408 0.67 0.347369
Target:  5'- aUGgCGAGCCgucgGCAGCGCcGGcCGACGa- -3'
miRNA:   3'- -ACgGCUCGG----CGUCGCGcUC-GCUGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.