miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24820 5' -60.4 NC_005284.1 + 47288 0.71 0.206333
Target:  5'- gGCCGucGCCGCGugaucaacgcGCGCGAGCuGAacCGUCa -3'
miRNA:   3'- aCGGCu-CGGCGU----------CGCGCUCG-CU--GUAG- -5'
24820 5' -60.4 NC_005284.1 + 41962 0.71 0.21175
Target:  5'- cGaaGAGuCCGCgGGCGCGAagcgGCGGCGUCc -3'
miRNA:   3'- aCggCUC-GGCG-UCGCGCU----CGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 23574 0.71 0.21175
Target:  5'- aUGCC-AGCCGgAGCGgguCGAGCGGuuCAUCg -3'
miRNA:   3'- -ACGGcUCGGCgUCGC---GCUCGCU--GUAG- -5'
24820 5' -60.4 NC_005284.1 + 27993 0.71 0.21729
Target:  5'- cGCgCGAuGuuGCAGCucuaucccGCGGGCGACAUg -3'
miRNA:   3'- aCG-GCU-CggCGUCG--------CGCUCGCUGUAg -5'
24820 5' -60.4 NC_005284.1 + 7065 0.71 0.21729
Target:  5'- cGCCGAGCacggccuucugCGCA-CGCGAGCGcGCGUg -3'
miRNA:   3'- aCGGCUCG-----------GCGUcGCGCUCGC-UGUAg -5'
24820 5' -60.4 NC_005284.1 + 8272 0.7 0.222953
Target:  5'- gGCCGAGCU---GUGCGAGCaGAUGUCg -3'
miRNA:   3'- aCGGCUCGGcguCGCGCUCG-CUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 8759 0.7 0.240698
Target:  5'- aGCC--GCCGCAGCgGCGuucGGCGuGCAUCa -3'
miRNA:   3'- aCGGcuCGGCGUCG-CGC---UCGC-UGUAG- -5'
24820 5' -60.4 NC_005284.1 + 14479 0.7 0.240698
Target:  5'- gGCCGAuacagGCCGCgGGCuuCGAGCaGACAUCc -3'
miRNA:   3'- aCGGCU-----CGGCG-UCGc-GCUCG-CUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 41610 0.7 0.246869
Target:  5'- gGCCGcGCCG-AGUGCGAGCuccgacacGCAUCg -3'
miRNA:   3'- aCGGCuCGGCgUCGCGCUCGc-------UGUAG- -5'
24820 5' -60.4 NC_005284.1 + 16104 0.7 0.246869
Target:  5'- cGCCGcacucguuGCCGuUGGCGCGguGGCGACGUUc -3'
miRNA:   3'- aCGGCu-------CGGC-GUCGCGC--UCGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 16175 0.7 0.246869
Target:  5'- gGCUcGGCgCGUcgauGGCGCuGGGCGGCAUCg -3'
miRNA:   3'- aCGGcUCG-GCG----UCGCG-CUCGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 20815 0.7 0.249374
Target:  5'- cUGUCGAGCagccCGCAGCagcgccggccgacgaGCGGGCGGCGc- -3'
miRNA:   3'- -ACGGCUCG----GCGUCG---------------CGCUCGCUGUag -5'
24820 5' -60.4 NC_005284.1 + 19198 0.69 0.259605
Target:  5'- cUGCCuGAGucuCCGCAGCGCGA-CGAgGUa -3'
miRNA:   3'- -ACGG-CUC---GGCGUCGCGCUcGCUgUAg -5'
24820 5' -60.4 NC_005284.1 + 17878 0.69 0.266172
Target:  5'- gGCCG-GCCGcCGGaucgGCGGGCG-CAUCc -3'
miRNA:   3'- aCGGCuCGGC-GUCg---CGCUCGCuGUAG- -5'
24820 5' -60.4 NC_005284.1 + 45628 0.69 0.266172
Target:  5'- cGCCGAacucuugcccauGCCGC-GCGCGAuagcauccGCGACAc- -3'
miRNA:   3'- aCGGCU------------CGGCGuCGCGCU--------CGCUGUag -5'
24820 5' -60.4 NC_005284.1 + 44907 0.69 0.272872
Target:  5'- cGCUGAGCUccugcuguGCGGCugccgucucGCGAGCGAUgAUCg -3'
miRNA:   3'- aCGGCUCGG--------CGUCG---------CGCUCGCUG-UAG- -5'
24820 5' -60.4 NC_005284.1 + 46575 0.69 0.279707
Target:  5'- uUGCCGAGCaugGCGGCGC-AGUGgGCAa- -3'
miRNA:   3'- -ACGGCUCGg--CGUCGCGcUCGC-UGUag -5'
24820 5' -60.4 NC_005284.1 + 44631 0.69 0.285975
Target:  5'- -aCCGAGCgcaucaucgugccCGUAcGCGCGAGCGcCGUCu -3'
miRNA:   3'- acGGCUCG-------------GCGU-CGCGCUCGCuGUAG- -5'
24820 5' -60.4 NC_005284.1 + 22747 0.69 0.293067
Target:  5'- gGCCGAGCgGCugcggucgaucaaGGgGCGcGCGAuCGUCa -3'
miRNA:   3'- aCGGCUCGgCG-------------UCgCGCuCGCU-GUAG- -5'
24820 5' -60.4 NC_005284.1 + 21558 0.69 0.293067
Target:  5'- uUGCCGAcgagcagGCCGCGcgggcguucgacGCGC-AGCGGCAUg -3'
miRNA:   3'- -ACGGCU-------CGGCGU------------CGCGcUCGCUGUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.