miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24820 5' -60.4 NC_005284.1 + 46547 1.09 0.000256
Target:  5'- uUGCCGAGCCGCAGCGCGAGCGACAUCa -3'
miRNA:   3'- -ACGGCUCGGCGUCGCGCUCGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 43623 0.83 0.024791
Target:  5'- cGCgGcGGCCGCGGCGCGAGCuGCGUCa -3'
miRNA:   3'- aCGgC-UCGGCGUCGCGCUCGcUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 14530 0.83 0.02782
Target:  5'- cGCCGAcGCUGCGG-GUGGGCGACAUCa -3'
miRNA:   3'- aCGGCU-CGGCGUCgCGCUCGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 44864 0.8 0.046609
Target:  5'- cGCCGuacGCCGCugcugcgcgAGCGCGAGCGACGcuUCg -3'
miRNA:   3'- aCGGCu--CGGCG---------UCGCGCUCGCUGU--AG- -5'
24820 5' -60.4 NC_005284.1 + 11609 0.77 0.075215
Target:  5'- gGCCGAGCgucagcgugacgUGCAGCGCGAacucgggGCGAUGUCg -3'
miRNA:   3'- aCGGCUCG------------GCGUCGCGCU-------CGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 9655 0.76 0.082043
Target:  5'- gGCCGAGCuCGCGGgcaUGCGAGCGAUg-- -3'
miRNA:   3'- aCGGCUCG-GCGUC---GCGCUCGCUGuag -5'
24820 5' -60.4 NC_005284.1 + 53785 0.76 0.09173
Target:  5'- aUGCCG-GCUGCuGCgGCGAGCG-CAUCu -3'
miRNA:   3'- -ACGGCuCGGCGuCG-CGCUCGCuGUAG- -5'
24820 5' -60.4 NC_005284.1 + 26789 0.75 0.102496
Target:  5'- cGCCcgcgggauaGAGCUGCAacaucGCGCGAGCGGCuUCa -3'
miRNA:   3'- aCGG---------CUCGGCGU-----CGCGCUCGCUGuAG- -5'
24820 5' -60.4 NC_005284.1 + 9864 0.74 0.127682
Target:  5'- -aCCGAGgCGCGGUGCGAGUGAU-UCg -3'
miRNA:   3'- acGGCUCgGCGUCGCGCUCGCUGuAG- -5'
24820 5' -60.4 NC_005284.1 + 37046 0.74 0.127682
Target:  5'- cGcCCGAGCCGguGCGCcugcgccuGCGACGUg -3'
miRNA:   3'- aC-GGCUCGGCguCGCGcu------CGCUGUAg -5'
24820 5' -60.4 NC_005284.1 + 4636 0.74 0.134821
Target:  5'- gGUCG-GCaGCGGCGUGAGCGGCAg- -3'
miRNA:   3'- aCGGCuCGgCGUCGCGCUCGCUGUag -5'
24820 5' -60.4 NC_005284.1 + 9216 0.73 0.138527
Target:  5'- cGUCGAuaGCCGaguGCGCGGGCGACGc- -3'
miRNA:   3'- aCGGCU--CGGCgu-CGCGCUCGCUGUag -5'
24820 5' -60.4 NC_005284.1 + 10999 0.73 0.141941
Target:  5'- uUGCCGAcaaggaugcgaaaGCCGCAGCGgGGGCaagaaccaACAUCg -3'
miRNA:   3'- -ACGGCU-------------CGGCGUCGCgCUCGc-------UGUAG- -5'
24820 5' -60.4 NC_005284.1 + 33630 0.72 0.181016
Target:  5'- uUGCuCGAGCCGC-GCGCG-GCauuCAUCa -3'
miRNA:   3'- -ACG-GCUCGGCGuCGCGCuCGcu-GUAG- -5'
24820 5' -60.4 NC_005284.1 + 6590 0.72 0.185361
Target:  5'- cGCguGGCCGCuGCGCGAGCugucaccgcaacgGGCGUCa -3'
miRNA:   3'- aCGgcUCGGCGuCGCGCUCG-------------CUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 45413 0.72 0.185849
Target:  5'- gUGUCGcAGUCGCGGCcgGCGAcgauauucGCGGCGUCg -3'
miRNA:   3'- -ACGGC-UCGGCGUCG--CGCU--------CGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 29736 0.71 0.190796
Target:  5'- cGUCGGGgCGCcgaacagcaccGGCGCGAGCGggauacGCAUCu -3'
miRNA:   3'- aCGGCUCgGCG-----------UCGCGCUCGC------UGUAG- -5'
24820 5' -60.4 NC_005284.1 + 45901 0.71 0.201036
Target:  5'- uUGCCGuGGUCGC-GCGCGAuGCGcagcACGUCg -3'
miRNA:   3'- -ACGGC-UCGGCGuCGCGCU-CGC----UGUAG- -5'
24820 5' -60.4 NC_005284.1 + 23298 0.71 0.205798
Target:  5'- aUGCCGAGgCGCGcaauGCGCGcuuuuccGGCGGCAc- -3'
miRNA:   3'- -ACGGCUCgGCGU----CGCGC-------UCGCUGUag -5'
24820 5' -60.4 NC_005284.1 + 47288 0.71 0.206333
Target:  5'- gGCCGucGCCGCGugaucaacgcGCGCGAGCuGAacCGUCa -3'
miRNA:   3'- aCGGCu-CGGCGU----------CGCGCUCG-CU--GUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.