miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24820 5' -60.4 NC_005284.1 + 22747 0.69 0.293067
Target:  5'- gGCCGAGCgGCugcggucgaucaaGGgGCGcGCGAuCGUCa -3'
miRNA:   3'- aCGGCUCGgCG-------------UCgCGCuCGCU-GUAG- -5'
24820 5' -60.4 NC_005284.1 + 8759 0.7 0.240698
Target:  5'- aGCC--GCCGCAGCgGCGuucGGCGuGCAUCa -3'
miRNA:   3'- aCGGcuCGGCGUCG-CGC---UCGC-UGUAG- -5'
24820 5' -60.4 NC_005284.1 + 14479 0.7 0.240698
Target:  5'- gGCCGAuacagGCCGCgGGCuuCGAGCaGACAUCc -3'
miRNA:   3'- aCGGCU-----CGGCG-UCGc-GCUCG-CUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 16104 0.7 0.246869
Target:  5'- cGCCGcacucguuGCCGuUGGCGCGguGGCGACGUUc -3'
miRNA:   3'- aCGGCu-------CGGC-GUCGCGC--UCGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 16175 0.7 0.246869
Target:  5'- gGCUcGGCgCGUcgauGGCGCuGGGCGGCAUCg -3'
miRNA:   3'- aCGGcUCG-GCG----UCGCG-CUCGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 41610 0.7 0.246869
Target:  5'- gGCCGcGCCG-AGUGCGAGCuccgacacGCAUCg -3'
miRNA:   3'- aCGGCuCGGCgUCGCGCUCGc-------UGUAG- -5'
24820 5' -60.4 NC_005284.1 + 17878 0.69 0.266172
Target:  5'- gGCCG-GCCGcCGGaucgGCGGGCG-CAUCc -3'
miRNA:   3'- aCGGCuCGGC-GUCg---CGCUCGCuGUAG- -5'
24820 5' -60.4 NC_005284.1 + 46575 0.69 0.279707
Target:  5'- uUGCCGAGCaugGCGGCGC-AGUGgGCAa- -3'
miRNA:   3'- -ACGGCUCGg--CGUCGCGcUCGC-UGUag -5'
24820 5' -60.4 NC_005284.1 + 21558 0.69 0.293067
Target:  5'- uUGCCGAcgagcagGCCGCGcgggcguucgacGCGC-AGCGGCAUg -3'
miRNA:   3'- -ACGGCU-------CGGCGU------------CGCGcUCGCUGUAg -5'
24820 5' -60.4 NC_005284.1 + 8272 0.7 0.222953
Target:  5'- gGCCGAGCU---GUGCGAGCaGAUGUCg -3'
miRNA:   3'- aCGGCUCGGcguCGCGCUCG-CUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 27993 0.71 0.21729
Target:  5'- cGCgCGAuGuuGCAGCucuaucccGCGGGCGACAUg -3'
miRNA:   3'- aCG-GCU-CggCGUCG--------CGCUCGCUGUAg -5'
24820 5' -60.4 NC_005284.1 + 23574 0.71 0.21175
Target:  5'- aUGCC-AGCCGgAGCGgguCGAGCGGuuCAUCg -3'
miRNA:   3'- -ACGGcUCGGCgUCGC---GCUCGCU--GUAG- -5'
24820 5' -60.4 NC_005284.1 + 11609 0.77 0.075215
Target:  5'- gGCCGAGCgucagcgugacgUGCAGCGCGAacucgggGCGAUGUCg -3'
miRNA:   3'- aCGGCUCG------------GCGUCGCGCU-------CGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 9655 0.76 0.082043
Target:  5'- gGCCGAGCuCGCGGgcaUGCGAGCGAUg-- -3'
miRNA:   3'- aCGGCUCG-GCGUC---GCGCUCGCUGuag -5'
24820 5' -60.4 NC_005284.1 + 53785 0.76 0.09173
Target:  5'- aUGCCG-GCUGCuGCgGCGAGCG-CAUCu -3'
miRNA:   3'- -ACGGCuCGGCGuCG-CGCUCGCuGUAG- -5'
24820 5' -60.4 NC_005284.1 + 4636 0.74 0.134821
Target:  5'- gGUCG-GCaGCGGCGUGAGCGGCAg- -3'
miRNA:   3'- aCGGCuCGgCGUCGCGCUCGCUGUag -5'
24820 5' -60.4 NC_005284.1 + 10999 0.73 0.141941
Target:  5'- uUGCCGAcaaggaugcgaaaGCCGCAGCGgGGGCaagaaccaACAUCg -3'
miRNA:   3'- -ACGGCU-------------CGGCGUCGCgCUCGc-------UGUAG- -5'
24820 5' -60.4 NC_005284.1 + 45413 0.72 0.185849
Target:  5'- gUGUCGcAGUCGCGGCcgGCGAcgauauucGCGGCGUCg -3'
miRNA:   3'- -ACGGC-UCGGCGUCG--CGCU--------CGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 45134 0.71 0.206333
Target:  5'- cGUCGAGCUGaugggcaaGGCGUGgucgacgcacGGCGACGUCg -3'
miRNA:   3'- aCGGCUCGGCg-------UCGCGC----------UCGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 47288 0.71 0.206333
Target:  5'- gGCCGucGCCGCGugaucaacgcGCGCGAGCuGAacCGUCa -3'
miRNA:   3'- aCGGCu-CGGCGU----------CGCGCUCG-CU--GUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.