miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24820 5' -60.4 NC_005284.1 + 455 0.66 0.407589
Target:  5'- cGgCGAGCCgGCAGCGCcuGGuCGGCGc- -3'
miRNA:   3'- aCgGCUCGG-CGUCGCGc-UC-GCUGUag -5'
24820 5' -60.4 NC_005284.1 + 956 0.66 0.444807
Target:  5'- gUGCCGAGguguaCGcCGGCGCGA-CGACu-- -3'
miRNA:   3'- -ACGGCUCg----GC-GUCGCGCUcGCUGuag -5'
24820 5' -60.4 NC_005284.1 + 1230 0.66 0.404877
Target:  5'- cGCCGgcAGCCGCucauGUucaucaucacgacuGCGGGCGcgaACAUCg -3'
miRNA:   3'- aCGGC--UCGGCGu---CG--------------CGCUCGC---UGUAG- -5'
24820 5' -60.4 NC_005284.1 + 3309 0.68 0.308408
Target:  5'- cUGUugCGAGCCGaUAGUGCaggccGAGCGGCGUUc -3'
miRNA:   3'- -ACG--GCUCGGC-GUCGCG-----CUCGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 4636 0.74 0.134821
Target:  5'- gGUCG-GCaGCGGCGUGAGCGGCAg- -3'
miRNA:   3'- aCGGCuCGgCGUCGCGCUCGCUGUag -5'
24820 5' -60.4 NC_005284.1 + 5705 0.67 0.389725
Target:  5'- aUGCCGAGuuGCuuacCGCGgucAGUGACAc- -3'
miRNA:   3'- -ACGGCUCggCGuc--GCGC---UCGCUGUag -5'
24820 5' -60.4 NC_005284.1 + 6590 0.72 0.185361
Target:  5'- cGCguGGCCGCuGCGCGAGCugucaccgcaacgGGCGUCa -3'
miRNA:   3'- aCGgcUCGGCGuCGCGCUCG-------------CUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 7065 0.71 0.21729
Target:  5'- cGCCGAGCacggccuucugCGCA-CGCGAGCGcGCGUg -3'
miRNA:   3'- aCGGCUCG-----------GCGUcGCGCUCGC-UGUAg -5'
24820 5' -60.4 NC_005284.1 + 7171 0.66 0.407589
Target:  5'- cGCa-AGCUuCAGCGCGuGCGACAc- -3'
miRNA:   3'- aCGgcUCGGcGUCGCGCuCGCUGUag -5'
24820 5' -60.4 NC_005284.1 + 7891 0.66 0.435322
Target:  5'- gUGCgCGAGCCGaCGGU-CG-GCGACcgCa -3'
miRNA:   3'- -ACG-GCUCGGC-GUCGcGCuCGCUGuaG- -5'
24820 5' -60.4 NC_005284.1 + 7983 0.68 0.331373
Target:  5'- -uCCGAGaaguuCGCGcGCGCGAGUGACGa- -3'
miRNA:   3'- acGGCUCg----GCGU-CGCGCUCGCUGUag -5'
24820 5' -60.4 NC_005284.1 + 8272 0.7 0.222953
Target:  5'- gGCCGAGCU---GUGCGAGCaGAUGUCg -3'
miRNA:   3'- aCGGCUCGGcguCGCGCUCG-CUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 8759 0.7 0.240698
Target:  5'- aGCC--GCCGCAGCgGCGuucGGCGuGCAUCa -3'
miRNA:   3'- aCGGcuCGGCGUCG-CGC---UCGC-UGUAG- -5'
24820 5' -60.4 NC_005284.1 + 9134 0.68 0.322809
Target:  5'- uUGCCGGGUguCGCGGaugcuauCGCGcGCGGCAUg -3'
miRNA:   3'- -ACGGCUCG--GCGUC-------GCGCuCGCUGUAg -5'
24820 5' -60.4 NC_005284.1 + 9216 0.73 0.138527
Target:  5'- cGUCGAuaGCCGaguGCGCGGGCGACGc- -3'
miRNA:   3'- aCGGCU--CGGCgu-CGCGCUCGCUGUag -5'
24820 5' -60.4 NC_005284.1 + 9232 0.67 0.36391
Target:  5'- cGUCGAGgCGCugacGCGCGcggcgGGCGGCAc- -3'
miRNA:   3'- aCGGCUCgGCGu---CGCGC-----UCGCUGUag -5'
24820 5' -60.4 NC_005284.1 + 9459 0.66 0.425026
Target:  5'- uUGCCGuGuacuuugggcaauCCGCAGuCGCG-GCGACGc- -3'
miRNA:   3'- -ACGGCuC-------------GGCGUC-GCGCuCGCUGUag -5'
24820 5' -60.4 NC_005284.1 + 9655 0.76 0.082043
Target:  5'- gGCCGAGCuCGCGGgcaUGCGAGCGAUg-- -3'
miRNA:   3'- aCGGCUCG-GCGUC---GCGCUCGCUGuag -5'
24820 5' -60.4 NC_005284.1 + 9864 0.74 0.127682
Target:  5'- -aCCGAGgCGCGGUGCGAGUGAU-UCg -3'
miRNA:   3'- acGGCUCgGCGUCGCGCUCGCUGuAG- -5'
24820 5' -60.4 NC_005284.1 + 10005 0.67 0.389725
Target:  5'- gGCCGAGacggaCCGCGGCcuugcgcaaGcCGAGCGugAUg -3'
miRNA:   3'- aCGGCUC-----GGCGUCG---------C-GCUCGCugUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.